Sinorhizobium kummerowiae: PZL22_003998
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Entry
PZL22_003998 CDS
T09063
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
skm
Sinorhizobium kummerowiae
Pathway
skm02020
Two-component system
skm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
skm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PZL22_003998 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PZL22_003998 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skm03021
]
PZL22_003998 (rpoN)
Transcription machinery [BR:
skm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PZL22_003998 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
YfcL
Motif
Other DBs
NCBI-ProteinID:
WHS92905
LinkDB
All DBs
Position
complement(2713336..2714880)
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AA seq
514 aa
AA seq
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MALSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTIS
DREDAGPHPAETGGETDEAAGQSDLYDSAMSRSGERLSEGLDADFANVFPDDTAPQRADA
PELLGQWKSMPGAGDAEGYDLDDFVASRKTLREALAEQLPFALSAVSDRLIARYFIDQLD
DAGYLHADLAETAETLGAAGEDVARVLHVLQQFDPPGVFARTLGECLAIQLRARNRLDPA
MEALVANLELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGTSFETGVFEAIIPDV
VVRAAPDGGWLVELNPDALPRVLVNHDYFTEISRSSRKNSGEQAFLNECLQNANWLTRSL
DQRARTIMKVASEIVRQQDAFLIHGVGHLRPLNLRIVADAIKMHESTVSRVTSNKYMLTP
RGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMINQESADAVLSDDDIVDVLKQAGVD
IARRTVAKYREAMSIPSSVQRRREKRALAKAAGF
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtccgccagccttcatctgagacagtcgcagtcgctggtcatgacgccgcag
ctgatgcagtcgatccagctgcttcagatgaaccatctggagctcagccatttcatcgcg
caggaagtcgagaagaacccgctgctggaggtccagccggccgatgagccaacgatatcg
gatcgcgaggatgccggtccgcatccggcggagaccggcggcgaaaccgacgaggcggca
ggtcagagcgacctttacgacagcgccatgtcgagatccggcgagaggctcagcgagggc
cttgacgccgacttcgccaacgtcttcccggacgatacggcgccgcagcgggcggatgcg
ccagagcttctcggccaatggaaatccatgccgggtgccggcgacgcagagggatacgat
ctcgacgatttcgtggccagccgcaagacattgagggaggcgctcgccgagcagctgccc
ttcgcactcagcgctgtctccgatcggctgatcgcccggtatttcatcgaccagctcgat
gatgccggctacctgcacgccgacctcgccgagaccgcggagacgctgggcgcggcaggc
gaggacgtggcgcgcgtgctgcacgtgcttcagcagttcgatccgccgggcgtcttcgcg
cgcacgcttggcgaatgtcttgccattcagctgcgcgcccgcaatcgtctcgacccggcg
atggaagcgctcgtggccaatctcgagctcctggcacggcgcgatttcgcaagcctcaag
aagatctgcggcgtcgacgaggaagacctgatcgatatgctcgccgagatccgcaagctc
gatccgaaaccgggcaccagcttcgaaaccggtgtgttcgaggccatcattcccgacgtc
gtcgtgcgcgccgcacccgatggcggctggcttgtcgagctcaatccggatgccctgccc
cgggttctcgtcaaccacgactatttcacagaaatatcgcgctccagccggaagaacagc
ggcgaacaggccttcctcaacgagtgcctgcagaatgccaactggctgacgcgcagcctc
gatcagcgcgccaggacgatcatgaaggtggcgagcgaaatcgtccggcagcaggacgcc
ttcctcatccacggcgtcggccacctgcgcccgctgaacctcaggatcgtcgcggacgcg
atcaagatgcacgagtcgacggtgagccgggtcacctccaacaaatacatgctgaccccg
cgcgggctcttcgaattgaaatatttcttcacggtctcgatcggctcggcggaaaacggc
gatgcacattcggccgagtccgtgcgccatcgcatccgcacgatgatcaatcaggaaagc
gccgatgccgtgctctcggacgacgacatcgtcgacgtcctcaagcaggccggcgtcgat
atcgccagacgcaccgtcgcaaaatatcgcgaggcgatgagcatcccctcctccgtccag
cgccgccgcgagaagcgggcgctggccaaggccgcgggattctga
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