Sinorhizobium kummerowiae: PZL22_005477
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Entry
PZL22_005477 CDS
T09063
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
skm
Sinorhizobium kummerowiae
Pathway
skm00040
Pentose and glucuronate interconversions
skm01100
Metabolic pathways
skm02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
skm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
PZL22_005477
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PZL22_005477
Enzymes [BR:
skm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
PZL22_005477
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
WHS96568
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All DBs
Position
pSkuCCBAU71714a:606116..607000
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AA seq
294 aa
AA seq
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MGHPEWQHPRRSTCGCKRCVHGEKRPRIEKRPDDSRRQGGRIVRVTGLIDVSEGRTSAEM
ESRARIPNSAWTTLIGVGRRAELKEAYVIVNSNDVIIRNLRIENPWDPQPACNPNDGENG
NSNSRFDAVTIDGAWNVWVDHVTFTDGRRTDDQNGMQNGRPKQHHDGALDVRNAANFVTI
SYSIFRDYEKNNLIGSSDGADGEDSGRLKVTIHNTLFQNISARARRASASAKCISTTTSS
DDNKRVLLLIDPSSKRPEQEAAIITATASDGTIDNRFYEYLRGRDLLLVSSERE
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgggccacccagaatggcagcacccgaggcggagcacatgcggctgcaagcgctgtgtt
cacggtgaaaaacgcccgagaattgaaaaacgccctgacgactcgcgccgccagggtggg
cggatcgtccgcgtcaccgggttgatcgacgtcagcgaggggcggacgtccgcagagatg
gaatcacgggcaagaattccaaattccgcctggacaaccttgattggggtcggaagaagg
gcggaacttaaagaggcatatgtgatcgtaaactcgaacgacgtaatcattcgaaatcta
aggatcgaaaacccttgggatccacaacccgcctgtaacccgaatgatggagaaaacggg
aactcgaattcgcgatttgatgctgtgacgatcgatggggcctggaacgtttgggtcgat
catgtcaccttcaccgacggccgccggacagacgaccaaaacggaatgcaaaacggcagg
cccaagcagcaccacgatggcgcgctcgacgtgcgaaacgcagcgaacttcgtaaccatc
tcgtactcgatattccgcgactatgagaagaacaatttgatcggctcaagcgacggcgcc
gacggtgaggacagtggtcggctcaaggttacgattcacaatactcttttccagaacatt
tccgcgcgggcgcgccgcgcgtccgcttcggccaagtgcatctctacaacaacttcaagc
gacgacaataagcgtgtactactactaatcgatccgtccagtaagcgccctgaacaggaa
gcggcgatcatcaccgccactgcgagcgatgggacaattgacaatcgcttttatgagtat
cttcgaggccgagatctattgctcgtctcgtccgaaagggaatga
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