Spiroplasma kunkelii: SKUN_00224
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Entry
SKUN_00224 CDS
T04056
Name
(GenBank) metallo-beta-lactamase superfamily hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
skn
Spiroplasma kunkelii
Pathway
skn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SKUN_00224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skn03019
]
SKUN_00224
Messenger RNA biogenesis [BR:
skn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SKUN_00224
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
DUF4120
KH_PARP14_2
Motif
Other DBs
NCBI-ProteinID:
ALA97146
UniProt:
A0A0K2JFX4
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All DBs
Position
204426..206093
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AA seq
555 aa
AA seq
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MAKINFFALGGLDERGKNLYCIEVEQDIFIFDAGTKNPERGILGIDVVIPNFDYLKENRT
RIKGVFITKPSYECSEALTYILKELAFPVYGSDLTCNILKFHLQRFKVRGKEECFHVINA
KDILDFGLCKVEVFSTTTNMPNSFGFALHTPDGTIIYTGDYIFDAKADPNFATDLQHLNQ
IIAKNKVLLFLSEASSASRRDYTAPNHKIKNYIERAVKETEDRIILACFDQDLHKISELF
DLVRENNISVGIYGQTLLESLKVLSDSKKLNFNGINLKGLQEAVKEEKSLIIVTGSGERL
YSRLIKIASGNDDILDIKESDTIILATPPNPGSELNHANVLDELARTVAKTIALSDKKVW
TMTASYEDVKLMSSIINPKYFVPVKGLYKDFVQAKMAAIEAGINPEHIFIVDNGEGLEFI
DGEYTKKSNKVKTADLYVDGIGVGDIGAVVLNERKQLATDGVVIIGVSIDSKTKELVSLI
DTQMRGVIYIQENNDIFRKMQKVIIEIIEKHYKKAVVGEMYDVNEVKNEIRSTISSFVKT
ETGKTPIILAIVNEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaattaattttttcgctcttggtggattagacgagcgaggtaaaaatttatat
tgcattgaggtagaacaagatatttttatttttgatgcgggaacaaaaaatccggaacgt
ggaattttaggaattgatgtagtaattcctaattttgattatctaaaggaaaaccgtact
cgaattaaaggtgtttttattacaaaaccttcgtatgaatgttctgaagcacttacttat
attttaaaagaattggcattcccagtttatggaagtgatttaacttgtaatattttaaaa
ttccatttacaacgttttaaagttcgtggtaaagaagaatgttttcatgttatcaatgca
aaagatattcttgattttggtttatgcaaggttgaagtattttcaacaacaacaaatatg
ccaaatagttttggttttgcattacatacacctgatggcacaattatttatactggagat
tatatttttgatgctaaagcagaccctaattttgcaacagatttacaacatttaaatcaa
attattgctaaaaataaggtactattatttttatcagaagcctcatcagcttcacgccgt
gattatacagcaccaaaccataagattaaaaattatattgaacgagctgttaaagaaaca
gaagatcgtattattttagcttgttttgatcaagatttacataaaattagtgagttattt
gatttagttcgtgaaaataatatttcagttggaatttatggtcaaactttattagaatca
ttaaaagtgttatcggatagtaaaaaactaaatttcaatggaattaatttaaaaggatta
caagaagcagttaaagaagaaaaatcattaattattgtaactggtagtggagaacgttta
tatagtcgtttgattaaaattgcttctggtaatgatgatattctagatattaaagaaagt
gatacaattattttagcaacaccgccaaacccaggaagtgaattaaatcatgccaatgtt
ttagatgaattagcacgaactgtggcaaaaacaattgctttatcggataaaaaagtttga
acaatgacagcaagttatgaagatgttaaattaatgagttcaattattaatccaaaatat
tttgtgccagtgaaaggtttatataaagattttgtgcaagcaaaaatggcagcaattgaa
gctgggattaatccagaacatatttttattgttgataatggtgaaggtcttgaatttatt
gatggtgaatatacgaaaaaaagcaataaggtaaaaaccgctgatttatatgttgatgga
attggcgttggtgacattggagcagttgttttaaatgaacgaaagcaattagctactgat
ggagttgttattataggagtttcaattgatagtaaaacaaaggaattggtttctttaatt
gacacccaaatgcgaggagtaatttatattcaagaaaataatgatattttccgtaaaatg
caaaaagttattattgaaattattgagaaacattataaaaaagctgttgttggtgaaatg
tatgatgtcaatgaagtaaaaaatgaaattagatcgacaattagttcatttgttaaaaca
gaaacaggaaaaacaccaattattttagcaattgtgaatgaaatttaa
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