Saccoglossus kowalevskii (acorn worm): 100367166
Help
Entry
100367166 CDS
T04123
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100367166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sko03000
]
100367166
03019 Messenger RNA biogenesis [BR:
sko03019
]
100367166
04121 Ubiquitin system [BR:
sko04121
]
100367166
Enzymes [BR:
sko01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100367166
Transcription factors [BR:
sko03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
100367166
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100367166
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100367166
Ubiquitin system [BR:
sko04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100367166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
Nup35_RRM_2
RRM_Nup35
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
100367166
NCBI-ProteinID:
XP_006816489
UniProt:
A0ABM0M8Z8
LinkDB
All DBs
Position
Un
AA seq
699 aa
AA seq
DB search
MANNNNHEDPMECPLCMEALEMDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP
EHPADFKPLSEEELQKIKNEKKQKDMQRKQKISENRKHLASVRVVQKNLVFVVGLSQRLA
DPEILKKHEYFGKFGKIVKVVINQSTSYAGSQGPSASAYVTYQKSEDALKAIQAVNNVFV
DGRTLKASLGTTKYCSHFLKNAQCPKPDCMYLHELGDEAASFTKEDMQLGKHQDYERKLL
EQLFGGGVTSTNDGHTAPRLNTTSRKAPSPPIANTNKEAWPSLQKSTETNKQPPSPPHPQ
LPQEMSPTLVPNDIDDINHTVTVGSPPCNHQLPSPRGDLHITTNGIATTNGIRTTNGILT
TNDTLLTTQIPPTVEPLARSIEQRISPFNGLHTDNSSSLFSNTFMPPLRPVPPPPVSVPN
ANTLPTTNDWQDSMFGNDTLPISSSTNWQEAFGFTSIKDKQEDELGFDPWDESSKGLAEI
MEKELQLNSTENNRASPEPDRTQPPPGFNNHVDAFQSAPTPVPSQRPPYRPDLVGSKMMS
WMPHTYTQPSNSVQHSSEPRTVKDWQDGLRALLPNINISFGQQGLSVPPQKDNWNSASNQ
SNWPTSDPAIITSITVSSAPSTSYTNANSDRESNLSESPPHWMKSLHTLTEVDSPTHINN
FYPAHIGRAGSWFSQQPPPPGFPTSTAGVHSPTEPQQSL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcaaataacaataaccatgaagatccaatggagtgtcccctgtgtatggaagcatta
gaaatggatgatgtcaattttttcccttgcacatgtggataccagatttgtcgtttctgt
tggcatcgtatccgtactgatgagaatggtttgtgtcctgcatgtagaaaaccatatcct
gaacacccagcagatttcaaacctttatcagaggaggaactacaaaagataaagaatgaa
aagaaacagaaagacatgcaacgaaagcagaaaatttcagagaatagaaaacatttggct
agtgtcagagtggtacagaaaaaccttgtgttcgttgttggtttgtcacagagacttgca
gatccagagattttgaaaaaacatgaatactttggtaaatttggtaagatcgttaaagtg
gttattaatcagagtacatcatatgcaggctcacagggacctagtgcaagcgcatacgtg
acataccagaagtcagaagacgctctgaaagccatacaggctgtcaacaatgtctttgta
gatggtagaacattgaaagcatccttgggtactacaaaatactgcagccacttcttaaaa
aatgcccagtgtccaaaaccagactgtatgtatttacatgaacttggtgacgaagccgcc
agctttacaaaagaagacatgcaattaggcaagcatcaagattacgaaagaaaattatta
gaacaattatttggtggaggggtaacttctacaaatgatggacatactgcgcctaggctg
aacacaacaagcaggaaagctccttcaccaccaatagcaaacacaaataaagaggcatgg
ccttcattacaaaaatcaacagagacaaataaacagccgccttctcctccacatcctcaa
ctaccacaagaaatgtctcctacgttggtgccaaatgacatagacgatataaaccacaca
gtaacagtgggttcgccaccctgtaatcatcagttacctagccctcggggagatcttcat
attaccacaaatggtatcgcaacaacaaatggaatacgaacaacaaatggtattctaaca
acaaatgatacactcctcacaacacagattccaccgacggtggaacctttagccagatct
atagaacagaggatatctccatttaatggtttacatacagacaactcttcatccttattt
tcgaacacttttatgcctccactcaggccagtaccgccaccgccagttagtgtgccaaat
gctaatacgttgccgacaacgaacgactggcaagatagtatgttcggcaatgacacatta
cctatcagtagctctacgaattggcaagaagcatttggttttacttcaataaaagataaa
caagaagatgaattagggtttgacccctgggatgaatcttctaaaggtttagcagaaatt
atggaaaaagagcttcagctaaattcaacagaaaacaacagagcatctccagaaccagac
agaacacaacctccacctggatttaataatcatgttgatgcttttcaatctgctcccacg
cctgttccttcacagagaccaccatataggccagatttagtaggaagtaaaatgatgtca
tggatgccacacacatacacacagccttccaattcagtgcagcattcatcagagcctaga
acagtaaaagattggcaagatggtctcagggctctccttcccaacataaatatcagcttt
ggccaacagggtctgtcagttcctccacaaaaagataattggaattcagccagtaatcaa
tcaaattggcccacatcagatcctgcaattattacaagtattacagtgtcttcagctcct
tcaacatcttacacaaatgctaactcagacagagaaagtaatttatcagaaagtccacca
cactggatgaaatcattacatacattgacagaagttgattcgcctacacacataaacaac
ttttatccagcacacatcggcagagctggtagctggttttcacaacagccccctccgcca
ggatttccaacatcaacagcaggtgtacacagccctacagagccacaacagtccctttga
DBGET
integrated database retrieval system
