Saccoglossus kowalevskii (acorn worm): 100367396
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Entry
100367396 CDS
T04123
Symbol
UPF1
Name
(RefSeq) UPF1 regulator of nonsense transcripts homolog (yeast)
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03013
Nucleocytoplasmic transport
sko03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100367396 (UPF1)
03015 mRNA surveillance pathway
100367396 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100367396 (UPF1)
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100367396 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100367396 (UPF1)
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100367396 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100367396 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
NPHP3_N
DEAD
SLFN-g3_helicase
AAA_16
nSTAND3
NAT10_TcmA_helicase
AAA_22
SRP54
ATPase
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
100367396
NCBI-ProteinID:
XP_002741733
UniProt:
A0ABM0H0X1
LinkDB
All DBs
Position
Un
AA seq
974 aa
AA seq
DB search
HIVNHLVRAKCKEVTLHKDGPLGETILECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCA
TQSSLKDMNWDPTQWQPLIHDRQFLSWLVKVPSEHEQLRARQISAQQINKLEELWKDNPD
ATLEDLEKPGVDEEPSAVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNIVIRWD
IGLNKKRISYFNFPRRDGDLKLMHGDELRLRYLGELHKPWSGVGHVVKIPDNYGDEVGIE
LKSNAGVPTECTHNFVVDFVWKSTSFDRMQSAMKTFAVDETSVSGYIYHKLLGHEVEEVV
VKCNLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATVVYHLSKQNL
GQVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIDSPVSFLALHNQVRNMDAIPEL
QKLQQLKDETGELSSADEKRYRSLKRNCERELLQNADVLCCTCVGAGDPRLARFRFRSIL
IDESTQATEPECMIPAVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIR
PIRLQVQYRMHPILSSFPSNIFYEGSLQNGVTPGERSNKSLDFPWPQTDKPMLFYATTGQ
EEIASSGTSYLNRTEAANVEKITTRFLRCGIRPEQIGIITPYEGQRSFIVQYMQHNGSLH
AKLYQEIEIASVDAFQGREKDYIILSCVRANEHQGIGFLNDPRRLNVALTRCKFGIIIVG
NPKVLSKQALWNHLLNHYKEQKVLVEGPLNNLKESMIQFSKPRKLINTTNPGGRFMSTAM
FDAREAMIPGSIYDRSGGMAGGSNHTNYDKYYHTHDQMGFINSERAHAAGANLPIPVNMF
MPHMPPPHSYYNQVPPGRPPPKGRGHGRRGGHHRGQNHYNSQNASQFTTGGPSQASQDTS
QPFSQGPLTQANMSMSQPLSQPGLSQPGLSQPELSQDSYLGDDFKSQADVVLSQDSTYQG
DRNYQQGMTNFSHY
NT seq
2926 nt
NT seq
+upstream
nt +downstream
nt
ccatattgtaaaccatcttgttcgtgccaaatgcaaagaagttaccctgcacaaagatgg
ccccttaggtgagactatattggaatgctacaactgtggctgtaggaacgtcttcttgtt
gggattcattccagccaaggctgattctgttgtggtgttgctatgccgacaaccatgtgc
cactcagagcagtttgaaagatatgaattgggatcctacacagtggcagcctttgattca
tgacagacagtttctatcgtggcttgttaaggtaccatcagaacatgaacagctcagagc
aagacaaatatctgcacagcagattaataaacttgaagaattatggaaagataatccaga
tgccacgcttgaagatcttgaaaaaccaggagttgatgaagaaccaagtgctgtactact
aagatatgaagatgcatatcaatatcagaatatctttggtccattggtcaaattggaagc
tgattacgataaaaaattgaaagaatctcagacgcaggataatattgtaatacgatggga
tataggtctcaataagaaaagaatatcttatttcaattttccaagacgagatggagattt
aaagttgatgcatggagatgaactgagacttcgttaccttggagaactacataaaccgtg
gtcaggtgttggacacgttgtcaaaataccagacaactacggtgatgaggtcggtattga
attgaagagcaatgctggtgttccgactgagtgcactcataactttgttgttgactttgt
ttggaaatcaacttcttttgacagaatgcaaagtgcaatgaagacgtttgccgtagatga
aacgtctgtgtctggttacatctaccataaactgctaggacatgaagtagaggaggtggt
tgttaaatgtaatctaccaaaacgattctcggcgccaggattaccagagttgaatcattc
gcaggtctatgctgtgaaaacagtgttacagcgaccattaagccttatccagggtccgcc
tggtaccggtaagactgtcacttcagccactgttgtataccatctttcaaaacagaacct
tggtcaagtattggtgtgtgctcctagtaatatagctgttgatcaactaactgaaaagat
acaccgtactggcctgaaagtcgtacgtctatgtgcaaagagcagagaagctattgattc
accggtctcatttctggcattgcataatcaggttcgtaacatggatgccattcctgagct
acagaaactgcaacaactgaaagatgaaaccggggaattatcaagtgctgacgaaaagag
atatcgttctttgaaaagaaattgtgaaagagaacttctacagaatgctgatgtcttgtg
ttgtacatgtgttggtgcaggggatccaagattggcaaggttccgattccgaagtattct
aattgatgaaagtactcaagccactgaacctgagtgcatgatacctgctgtgcttggtgc
caaacagttgattctcgtgggcgatcactgtcagcttggtcccgttgtaatgtgcaagaa
agcagcccgagctggtctttctcagtctttatttgaacgtcttgttgtattgggtattcg
tccaatacgtctgcaagtacaatatcgtatgcatccgatactcagttctttcccttccaa
tatcttctacgagggatccttgcaaaatggtgtcaccccaggtgaaagaagcaacaagtc
tctggactttccatggccgcagactgataaaccgatgttattttatgctaccactggtca
ggaagaaattgctagctccggaacctcttacttgaacagaactgaagcggccaatgtgga
gaaaatcaccacacgctttttgagatgcggtattcggccagaacagattggaatcatcac
tccctatgagggtcagcggtcgtttattgtgcaatacatgcaacacaatggatcacttca
tgccaagctgtatcaggaaatagaaattgccagtgtggatgctttccaaggacgtgaaaa
agattacatcatattgtcctgtgttagagccaatgaacatcaaggaattggtttcttgaa
cgatccgagacgtctgaatgtagcattaacaagatgcaaatttggaatcattattgttgg
caaccctaaagtgttatctaagcaagctttgtggaatcatctgttgaaccattataaaga
acagaaggtattggttgaagggccgctaaataatctgaaagaaagtatgattcagttcag
taaaccacgtaaactcatcaataccactaatcctggtggtcgttttatgagtactgcaat
gtttgacgcaagggaggcaatgattcctggcagtatttatgatagatctggaggcatggc
tggtggatcaaatcacacaaattatgataaatactaccatactcatgatcagatgggttt
tattaactctgagagagcacacgctgccggagccaatctacccatccctgtcaacatgtt
catgccgcatatgccaccaccccattcatactacaaccaagtaccgcctggaaggccacc
acccaaaggacgaggtcacgggcgtcggggaggtcaccatagagggcaaaatcattacaa
cagtcagaatgcgtcgcagttcacgactggtggtccgagtcaagctagtcaggacacttc
tcaaccattctcacagggccccctaactcaggctaatatgtcaatgagtcagccactgag
tcagcctggtttgtctcagccggggctttcacagccagagctctcacaggacagttacct
gggtgatgacttcaagtcgcaagcagacgtggtactgtcgcaagattccacctatcaagg
tgatcgcaattatcaacaaggaatgacaaacttctctcactattag
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