| Entry |
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| Symbol |
UPF1
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| Name |
(RefSeq) UPF1 regulator of nonsense transcripts homolog (yeast)
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| KO |
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| Organism |
sko Saccoglossus kowalevskii (acorn worm)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:sko00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100367396 (UPF1)
03015 mRNA surveillance pathway
100367396 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:sko03019]
100367396 (UPF1)
Enzymes [BR:sko01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100367396 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100367396 (UPF1)
Messenger RNA biogenesis [BR:sko03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100367396 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100367396 (UPF1)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Un
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| AA seq |
974 aa
HIVNHLVRAKCKEVTLHKDGPLGETILECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCA
TQSSLKDMNWDPTQWQPLIHDRQFLSWLVKVPSEHEQLRARQISAQQINKLEELWKDNPD
ATLEDLEKPGVDEEPSAVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNIVIRWD
IGLNKKRISYFNFPRRDGDLKLMHGDELRLRYLGELHKPWSGVGHVVKIPDNYGDEVGIE
LKSNAGVPTECTHNFVVDFVWKSTSFDRMQSAMKTFAVDETSVSGYIYHKLLGHEVEEVV
VKCNLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATVVYHLSKQNL
GQVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIDSPVSFLALHNQVRNMDAIPEL
QKLQQLKDETGELSSADEKRYRSLKRNCERELLQNADVLCCTCVGAGDPRLARFRFRSIL
IDESTQATEPECMIPAVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIR
PIRLQVQYRMHPILSSFPSNIFYEGSLQNGVTPGERSNKSLDFPWPQTDKPMLFYATTGQ
EEIASSGTSYLNRTEAANVEKITTRFLRCGIRPEQIGIITPYEGQRSFIVQYMQHNGSLH
AKLYQEIEIASVDAFQGREKDYIILSCVRANEHQGIGFLNDPRRLNVALTRCKFGIIIVG
NPKVLSKQALWNHLLNHYKEQKVLVEGPLNNLKESMIQFSKPRKLINTTNPGGRFMSTAM
FDAREAMIPGSIYDRSGGMAGGSNHTNYDKYYHTHDQMGFINSERAHAAGANLPIPVNMF
MPHMPPPHSYYNQVPPGRPPPKGRGHGRRGGHHRGQNHYNSQNASQFTTGGPSQASQDTS
QPFSQGPLTQANMSMSQPLSQPGLSQPGLSQPELSQDSYLGDDFKSQADVVLSQDSTYQG
DRNYQQGMTNFSHY |
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| NT seq |
2926 nt +upstreamnt +downstreamnt
ccatattgtaaaccatcttgttcgtgccaaatgcaaagaagttaccctgcacaaagatgg
ccccttaggtgagactatattggaatgctacaactgtggctgtaggaacgtcttcttgtt
gggattcattccagccaaggctgattctgttgtggtgttgctatgccgacaaccatgtgc
cactcagagcagtttgaaagatatgaattgggatcctacacagtggcagcctttgattca
tgacagacagtttctatcgtggcttgttaaggtaccatcagaacatgaacagctcagagc
aagacaaatatctgcacagcagattaataaacttgaagaattatggaaagataatccaga
tgccacgcttgaagatcttgaaaaaccaggagttgatgaagaaccaagtgctgtactact
aagatatgaagatgcatatcaatatcagaatatctttggtccattggtcaaattggaagc
tgattacgataaaaaattgaaagaatctcagacgcaggataatattgtaatacgatggga
tataggtctcaataagaaaagaatatcttatttcaattttccaagacgagatggagattt
aaagttgatgcatggagatgaactgagacttcgttaccttggagaactacataaaccgtg
gtcaggtgttggacacgttgtcaaaataccagacaactacggtgatgaggtcggtattga
attgaagagcaatgctggtgttccgactgagtgcactcataactttgttgttgactttgt
ttggaaatcaacttcttttgacagaatgcaaagtgcaatgaagacgtttgccgtagatga
aacgtctgtgtctggttacatctaccataaactgctaggacatgaagtagaggaggtggt
tgttaaatgtaatctaccaaaacgattctcggcgccaggattaccagagttgaatcattc
gcaggtctatgctgtgaaaacagtgttacagcgaccattaagccttatccagggtccgcc
tggtaccggtaagactgtcacttcagccactgttgtataccatctttcaaaacagaacct
tggtcaagtattggtgtgtgctcctagtaatatagctgttgatcaactaactgaaaagat
acaccgtactggcctgaaagtcgtacgtctatgtgcaaagagcagagaagctattgattc
accggtctcatttctggcattgcataatcaggttcgtaacatggatgccattcctgagct
acagaaactgcaacaactgaaagatgaaaccggggaattatcaagtgctgacgaaaagag
atatcgttctttgaaaagaaattgtgaaagagaacttctacagaatgctgatgtcttgtg
ttgtacatgtgttggtgcaggggatccaagattggcaaggttccgattccgaagtattct
aattgatgaaagtactcaagccactgaacctgagtgcatgatacctgctgtgcttggtgc
caaacagttgattctcgtgggcgatcactgtcagcttggtcccgttgtaatgtgcaagaa
agcagcccgagctggtctttctcagtctttatttgaacgtcttgttgtattgggtattcg
tccaatacgtctgcaagtacaatatcgtatgcatccgatactcagttctttcccttccaa
tatcttctacgagggatccttgcaaaatggtgtcaccccaggtgaaagaagcaacaagtc
tctggactttccatggccgcagactgataaaccgatgttattttatgctaccactggtca
ggaagaaattgctagctccggaacctcttacttgaacagaactgaagcggccaatgtgga
gaaaatcaccacacgctttttgagatgcggtattcggccagaacagattggaatcatcac
tccctatgagggtcagcggtcgtttattgtgcaatacatgcaacacaatggatcacttca
tgccaagctgtatcaggaaatagaaattgccagtgtggatgctttccaaggacgtgaaaa
agattacatcatattgtcctgtgttagagccaatgaacatcaaggaattggtttcttgaa
cgatccgagacgtctgaatgtagcattaacaagatgcaaatttggaatcattattgttgg
caaccctaaagtgttatctaagcaagctttgtggaatcatctgttgaaccattataaaga
acagaaggtattggttgaagggccgctaaataatctgaaagaaagtatgattcagttcag
taaaccacgtaaactcatcaataccactaatcctggtggtcgttttatgagtactgcaat
gtttgacgcaagggaggcaatgattcctggcagtatttatgatagatctggaggcatggc
tggtggatcaaatcacacaaattatgataaatactaccatactcatgatcagatgggttt
tattaactctgagagagcacacgctgccggagccaatctacccatccctgtcaacatgtt
catgccgcatatgccaccaccccattcatactacaaccaagtaccgcctggaaggccacc
acccaaaggacgaggtcacgggcgtcggggaggtcaccatagagggcaaaatcattacaa
cagtcagaatgcgtcgcagttcacgactggtggtccgagtcaagctagtcaggacacttc
tcaaccattctcacagggccccctaactcaggctaatatgtcaatgagtcagccactgag
tcagcctggtttgtctcagccggggctttcacagccagagctctcacaggacagttacct
gggtgatgacttcaagtcgcaagcagacgtggtactgtcgcaagattccacctatcaagg
tgatcgcaattatcaacaaggaatgacaaacttctctcactattag |
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