Saccoglossus kowalevskii (acorn worm): 100369312
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Entry
100369312 CDS
T04123
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03022
Basal transcription factors
sko03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100369312
09124 Replication and repair
03420 Nucleotide excision repair
100369312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sko03021
]
100369312
03400 DNA repair and recombination proteins [BR:
sko03400
]
100369312
Transcription machinery [BR:
sko03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100369312
DNA repair and recombination proteins [BR:
sko03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100369312
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
DUF3334
YjjI-like
Motif
Other DBs
NCBI-GeneID:
100369312
NCBI-ProteinID:
XP_006814889
UniProt:
A0ABM0M4E8
LinkDB
All DBs
Position
Unknown
AA seq
571 aa
AA seq
DB search
MATALSEDVLLVVSHVRHKKRDGSLYLMTERIGWMEGSRQMFSISHLYADIKMQKISTEG
KAKVQLQLILHDGGANTFHFANAERTSALKDRNDVKELLQQLLPKFKTKANKELEEKNRM
LQEDPELFQLYKDLVMSGVISADEFWANRTVNSTGSQNTQHQDVGVSAAFLADIKPQTDG
CNGLRYNLTADIIESIFRTYPAVKKKHAENVPDNMSESEFWTRFFQSHYFHRDRINAGNK
DLFTDCAKIDEKEMKKVVNERLDDPLLDLSGMSDSSFGEGYGVGAKDSKSSGNISNTNLI
KRFNHHNTRVLGVSEKAGTSIQSSSIESQPSTSTGSSLPNKNNSHIANNQSNGRNISSVN
SNTTQDETVPSKRMRIKEAIEYEDLVPETRPPAVMLNLDKAERYHHGPMPVSKMDYATTE
EMINATQVIREDMAQAKPTLFQTIHGSVASSVVSELSPGGSLMHGLGQQPLHQLYSQDIQ
VEMKNMYSALCELLRHFWSCFPVSSKFLEEKVTRMKINLERFQTSKLQPFREKLAMQHFN
VNLINHMEELLETAYGKFTSWQARRMGSIVR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggccactgctttgagtgaagatgtgttgttagttgtcagtcacgttcgtcacaagaag
agagacggctccttgtatctgatgactgaaagaataggctggatggaaggaagtcgccaa
atgttttctattagccatttatatgcggatattaaaatgcaaaagatcagcacagagggc
aaggctaaagttcagctacaactaatactacatgatggcggtgcaaacacttttcacttt
gccaatgcagaacgtacaagtgccttgaaagatagaaatgatgttaaagaactcctgcaa
cagctactgccaaaattcaagactaaagctaataaagaattggaagagaagaatagaatg
ctacaggaagacccagaattatttcaattgtataaagatcttgttatgagtggagttatt
tctgctgatgaattctgggctaataggactgtgaattccacaggttcccagaatacccag
catcaggatgtaggtgtgtcggcagcatttctggcagacattaaaccacaaaccgatggt
tgtaatggtttaagatataatctgacagctgatattatagaatctatattccgtacatat
ccagcagttaaaaagaaacatgccgaaaatgttccagataatatgtcagagagtgagttt
tggacaagatttttccagtcccattattttcacagggatcgaataaatgctggaaataaa
gacttatttacagattgtgctaagattgatgagaaagaaatgaagaaagttgtgaatgaa
agattggatgatccattgttagatttaagtggtatgtcagatagctcatttggtgagggt
tatggtgttggtgctaaagacagtaaatcatcaggcaatattagcaatactaatttaata
aaaaggtttaatcatcataataccagggtacttggtgtctcagaaaaagctggtactagt
atacaaagtagcagcattgaatcacagccaagtacaagtacaggcagctctttgccaaat
aaaaacaattctcacattgctaataaccaatccaatggtaggaatatatcgtcagtgaac
tcaaatacaactcaggatgaaactgtgccctcaaaaaggatgaggataaaagaagctatt
gaatatgaggatttagtgccagagactagacctcctgctgtgatgttgaacttagataaa
gctgaacgataccaccatggacccatgccggtcagtaaaatggactatgcaacaacggag
gagatgataaatgctactcaagtcatcagggaagacatggcacaagctaagccaaccctc
tttcagactattcatggtagtgttgccagtagtgttgtcagtgaattatcaccaggggga
agtcttatgcatggtcttggtcaacaaccattacatcagctttatagtcaagacattcaa
gtcgagatgaaaaacatgtacagtgcactctgtgagcttctgaggcatttctggagctgt
ttcccggtctcttcaaaattcttggaagagaaggtgacgagaatgaaaataaatcttgaa
cggttccaaacatccaagttgcaacctttcagggagaaattagccatgcaacattttaat
gtgaatctaataaaccacatggaagaacttttggaaactgcttatggaaagttcacatcc
tggcaagccagaagaatgggatctattgtaagataa
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