Saccoglossus kowalevskii (acorn worm): 100369781
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Entry
100369781 CDS
T04123
Name
(RefSeq) probable ATP-dependent RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100369781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100369781
03012 Translation factors [BR:
sko03012
]
100369781
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100369781
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100369781
Translation factors [BR:
sko03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100369781
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
nSTAND3
ATPase
AAA_22
RNA_pol_Rpb1_3
NB-ARC
PhoH
AAA_19
AAA_14
AAA_23
ABC_tran
NACHT
NPHP3_N
Sigma54_activat
AAA_16
Motif
Other DBs
NCBI-GeneID:
100369781
NCBI-ProteinID:
XP_002737580
LinkDB
All DBs
Position
Un
AA seq
1014 aa
AA seq
DB search
MRLLTWRRFLDLLSVNARPAQITIPLAYSLEQNKPMSSYQNRRGRRYMRGGGRRNFGSST
GAGGDGDGDKGGEIDHARGYGPPPGLKGRDIGMWYAQRGRQRKRQQELIERPTVQMDMHR
VEHIEKLLHDVQTEKDRKTRPQKSMSIIPPAEDDITFSYYGRSLEKNDRVDEDLKDALAE
KKLRNQRYKKMMQFREKLPAFKKKQDLLDLIESSQVVVISGETGCGKTTQVAQFILDDYI
EKGKGSMCRVVCTQPRRISAVSVAERVAEERGETVGSGMSVGYQIRLDCKLPRNQASILY
CTTGILLKWLQGDPLLNGLSHVILDEVHEQNIICDFLIIILRDLLPLRPDMKLILMSATV
NAEQFSSYYGNCPMETIPGFTFPVTEYWVEDVLEFTKYRPAPKPERFKKKHWRFIRGKRK
REEELKMEQEYEANFNEYLQSIEGSYSPEVLEKIQNMDDEEIDYDLVVEVIRYIAINKEE
GAILVFVPGWTDISKINDKLLRQTMFKSGPFIIIPLHSLMPTVNQRQIFQTPPAGTRKII
IATNIAETSITIEDVVHVVNTGKVKESNYDVKNNICTLKPEWISKAAAKQRRGRSGRVKP
GFCYHLFTQLRAHMMADYQLPEMLRTPLEEVCLQIRLLKLGHIEEFLSKAMNPPPVQTII
TAKYSLKQLNALDDEENLTPLGYHLAKLPVEPRIGKMILFAAMFCCLDPVLTIAASLSFK
DPFIIPLGKEKEADAKRKLLSRNDQSDHMMLSYTFQGWEDAKQQGQRSQQNYCWDYFLSS
NTLKMLDNMKTQFCEYLCNIGFVSNTQSKQAAANTNSDNVKLIKAVVCAGLYPNVAKIET
QMSRKKAFSRGPRLSTQQDGRVNLHPKSVNCDQQLDGKWLIYHQKIRSNGIYLHDSSVIE
PYPLLFFGGDITMGKDDTQDVIRVDDWIVFKASPTIATLVKKLRIELDELLESKITSPGI
TQWCHDNKEGKIMNAIVDLLTMEEDHDRQSTGFRGQSSTNYRGHSSHHKKWGGY
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctattgacctggcgacgttttctcgatctgttgtcagtcaacgctcgtcctgct
caaattacaatccccctcgcatattccttggaacaaaacaagccaatgtcgtcgtaccaa
aacagacgagggaggcgttacatgagaggcggcggaaggagaaacttcggaagtagtact
ggtgccggcggcgacggcgacggggacaaaggaggagagattgatcatgctaggggctac
ggaccaccccctgggttgaaagggagagatatagggatgtggtatgcccaaagaggtcgg
caaagaaaaagacagcaagaactaatagagagaccaactgtacaaatggacatgcataga
gtagaacatattgaaaaactactacatgatgtacagactgaaaaggatagaaagacaaga
ccacagaaatccatgtctattattccaccagctgaagatgatatcacctttagttattat
ggtcgatccttggaaaaaaatgatagagttgatgaagatttgaaagatgcattggctgaa
aagaaactacgtaatcaacgatataagaaaatgatgcagtttcgggaaaagttaccagca
ttcaaaaagaaacaggatttacttgatctgatcgagtccagtcaagtcgtggtcattagt
ggtgagactggatgtggtaaaactacacaggtggctcagtttatactagatgattatatt
gaaaaaggaaaaggttctatgtgtcgtgtagtgtgtacgcagcctaggagaattagtgct
gtatctgtagctgagagagttgctgaagagagaggggaaacagttggtagtggtatgagt
gttggataccagatcagattagattgtaaactgccacgaaatcaggcatccatactctac
tgtacaacaggaatattgttaaaatggcttcaaggtgatccgttattgaatggtctgagt
catgtaatcttagatgaagttcatgagcaaaatattatttgtgactttctgataattatc
ttacgggatctgttaccactcaggcctgacatgaagttgattcttatgagtgcaaccgtg
aatgctgaacagttttctagttattatggcaattgtcctatggaaaccattccaggattc
acattcccagtaactgaatactgggtggaagatgtactggaattcacaaaataccgtcca
gcaccaaaaccagagagatttaaaaagaaacactggaggtttattcgaggtaagaggaag
cgagaagaagaactgaagatggagcaagagtatgaggccaattttaatgaatatttacag
tcaattgaaggaagttattcacctgaagtattagaaaaaatacaaaacatggatgatgag
gagatcgactatgatttagttgttgaagtcatcagatatattgcaatcaacaaggaggaa
ggtgctattttggtctttgttcctggatggactgatataagtaaaataaatgataagcta
ttgagacaaacaatgtttaaatctggtccatttattatcataccgcttcattctctgatg
ccaacagtcaaccaacgacagatattccagacaccacccgctggtacacgtaagatcatt
atagcgactaacatagctgagactagtattaccattgaggacgtggttcatgtggtcaat
actggcaaagttaaggagagtaattatgacgtgaaaaacaatatatgtacattgaaacca
gaatggatcagtaaagctgctgctaagcagagaaggggcagatctggcagagtgaagcca
ggtttctgttaccatttatttactcaactccgtgctcacatgatggctgactaccaatta
ccagagatgctcagaactccattagaggaagtctgtttacagatacgtttattaaagctg
ggccatattgaagagtttctgagtaaagcaatgaatccaccaccagttcaaactatcata
actgcaaaatatagtctgaaacaactgaatgccttggatgatgaagagaacttgacaccc
cttggataccatcttgcaaagttacctgtggaaccacgtattggtaaaatgatactgttt
gctgcaatgttttgttgcttagatccagtactcacaattgctgccagccttagctttaaa
gatccatttataattcctctgggtaaagaaaaagaggcagatgcaaagaggaaattgtta
tcgagaaatgaccagagcgatcacatgatgctgtcatatacattccaaggatgggaagat
gcaaaacagcaaggtcaaaggtcacagcaaaattactgctgggactatttcttgtcaagc
aatactcttaagatgctggacaatatgaagactcagttctgtgaatatttatgcaatatt
ggatttgtatcaaacacacagagtaaacaagcagcagccaatacaaactcagataatgta
aaactaattaaagctgtagtatgtgcggggctttatccaaatgttgctaaaatagaaact
caaatgtcaaggaaaaaagcattttcccgaggaccacgcctaagtactcagcaagatgga
cgagtcaatttgcatcctaaatcagttaattgtgatcaacaactggacggcaaatggttg
atatatcatcagaaaatcagatcaaatggaatttatctacatgatagcagtgttatagaa
ccatatcccttgttattctttggtggtgatataacaatgggcaaagacgacacacaagat
gttatcagagtagatgactggattgtattcaaagcatctcccacgatagcaactcttgtc
aagaaactaaggattgaacttgatgaacttttagaatctaaaatcaccagccctggaata
actcagtggtgtcatgacaacaaagaaggcaaaataatgaatgctattgtggatctgctt
acaatggaagaagatcatgatagacaaagtactgggttccggggtcaaagttcaactaat
tacaggggtcatagttcacaccacaagaagtggggtgggtactga
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