Saccoglossus kowalevskii (acorn worm): 100370530
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Entry
100370530 CDS
T04123
Symbol
MSH2
Name
(RefSeq) mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)
KO
K08735
DNA mismatch repair protein MSH2
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100370530 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sko03400
]
100370530 (MSH2)
DNA repair and recombination proteins [BR:
sko03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100370530 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Phage_ProQ_C_like
MCU
Motif
Other DBs
NCBI-GeneID:
100370530
NCBI-ProteinID:
XP_002740239
LinkDB
All DBs
Position
Un
AA seq
929 aa
AA seq
DB search
MALQPNQQLSLDFVQEQGFLSFFRSMSEKPDTTFRVFDRTEYYTCHGSDAVFAAKEVFKT
TGVIKYLGTGTKKVESVVLSKMNFESLVKDLLLVRQYRVEVYKNKGGGKNNDWTLEFKAS
PGNLTQFEEILFGANDMSTSACVLAVKMAMDGGHKIIGAAFADATLRKMGVCEFPDNDQF
SNLEALVVQIGPKECILPSGDSGPEMNKLKQILERSGLLITDRKKSDYNTKDNVQDLNRL
LKFKKEDQANSSALAEMEKTHAMSSLSALIKYLELLSDESNFGQFQLTTFDLSQYMRLDA
AAVRALNLLPSTLDGGNKSMCLLGLLNKCRTPQGQRLLAQWVKQPLMDKNKIEERLNIVE
AIFEDNELRQTLLDDQLKRVPDFQRLAKKFQRKKATLQDCYRVYQAVEYMPHLLETLERH
GGKHQMLLMEVFSNPLKEVLMDFSKYQEMVETTLDMKQVEQHEFVIKPDFDPDLQTLREK
INDLEDEIKSQLKKASTDLNVEANKVLKLESNSQLGYFFRVTRKEEKVIRNNRKYITIDT
NKNGVRFTNSALKSFNEEYMLAKESYNETQKAVVMEIISIAAGYVDPMQLINEILAQLDV
LVSFACVSANAPIPYIRPTLQAKGSGQLKLIQSRHPCLEVQDEVAFIPNDVTFDKEKEMF
HIITGPNMGGKSTYIRQIGVVTLMAQIGCFVPCDQAELTIVDCILARVGAGDSQLKGVST
FMSEMLETASILRSASECSLVIIDELGRGTSTYDGFGLAWAISEYIATKIKCFCLFATHF
HELTSLADAVPTVNNLHVSALTTGDTLTLLYKVKPGVCDQSFGIHVAEMVHFPQKVIDFA
KQKAAELEDYQSISVSDSAMEGHDEPAAKKRRVAKEEGEKLIRGFLSKFKEIPLSSMTDE
EAMAEIEKLKSEIKGKNNPYVEDILARGC
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggcgctacaacctaatcaacaactctctttggattttgtgcaggaacaaggatttctt
tcctttttccgatcaatgtcagagaaacctgacacaacattcagagtatttgatagaaca
gaatattacacttgccatggatcggatgctgtatttgctgcaaaagaagtctttaaaaca
actggcgttatcaaatatctcggaacaggaacaaaaaaggtggaatctgtggttctcagt
aaaatgaactttgaatcgctagtcaaggatttgttgcttgtgcgacagtacagagtagaa
gtgtataaaaacaagggcggaggaaagaataatgactggaccttggaatttaaggcgtcg
ccaggtaacctgactcagtttgaagagattctgtttggtgctaatgatatgtcaacatcg
gcttgtgtgctggctgttaaaatggcaatggatggtggacacaaaattattggtgcagcc
tttgccgatgccacactgaggaaaatgggtgtctgtgagttccctgataatgatcagttc
tcaaatttagaggctttggtagtacagattggaccgaaagagtgtatactgccctctggt
gacagcggacctgaaatgaacaaactgaaacagatcctcgaaagaagtggtttattgata
acagatcggaaaaagtctgattacaatactaaggacaatgtgcaagatttgaatagatta
ctaaagttcaaaaaagaagaccaggctaatagcagtgcacttgctgagatggagaaaacc
catgcaatgtcatcgctgtctgctctgatcaaatatttagagctcctgagtgacgagagt
aattttggacaatttcaactcacaacctttgacctgagtcagtacatgaggctggacgct
gctgcagtacgtgctcttaacttgctacctagtacacttgacggtggtaacaaaagtatg
tgtttgttagggctgttgaataaatgccgcactccacagggtcagaggttactggcacag
tgggtgaaacaacccctcatggataaaaataaaatagaagaaagactaaacatagtggaa
gccatatttgaagacaatgaactgcgacagactttgttagatgaccagttgaagagagtt
cctgactttcaaagacttgctaaaaagtttcagagaaagaaagccacgttacaagactgt
tatcgggtttatcaagctgtcgagtacatgccgcatttactggagacgttagagaggcat
ggaggcaaacaccagatgctcttgatggaggtgtttagtaaccctctaaaggaagtgtta
atggatttttcaaaatatcaagaaatggtggagactactttagatatgaaacaggtagaa
caacatgaatttgtcatcaaaccagattttgatccggatttacaaactttaagagaaaag
atcaatgatttagaggatgaaatcaagtcacagttgaaaaaagcatccacagatctgaat
gttgaggcaaataaagttctaaaactggagtcaaactctcagctcggctatttcttcaga
gtaactagaaaggaggagaaagtgatcagaaacaacagaaagtacatcaccatagatacc
aacaaaaatggcgtccgatttaccaactctgctttgaagtcattcaatgaagaatacatg
ctggcgaaagaatcctacaatgagacccaaaaagcagttgtcatggagattatcagcata
gcagctggatatgttgatccaatgcaactcattaatgaaatcttagcacagttggatgtg
cttgtaagttttgcctgcgtatctgcgaatgcacctattccatatatacgtccaacactg
caagcaaagggaagtggccagttgaaactcatccagtcaagacatccatgtctggaggtg
caggacgaagtggcatttattccaaacgatgtaacatttgacaaggagaaggagatgttt
cacatcatcacaggcccaaatatgggtgggaaatctacatatattagacagattggagtg
gttactttaatggctcagattggttgttttgtaccatgtgaccaagcagagttgacaata
gttgactgtatattggcgagagtaggagccggtgacagtcaactgaaaggggtctccaca
ttcatgtctgaaatgttggaaactgcttcaattttaaggtctgcttctgagtgttcctta
gtaataattgatgaacttggtagaggtacatctacatacgatgggtttggactagcatgg
gcaatatcagagtacatagctactaaaattaagtgtttctgtttatttgctactcatttt
catgagctgacatcattggctgatgcggtgccaactgtgaataatttacatgtatcagcg
ctgactacaggagacacactaacgttgctctacaaagtcaaaccaggtgtctgtgaccag
agttttgggattcatgttgctgagatggtgcactttccacagaaggtgattgactttgcc
aaacagaaagctgcagagctggaagattaccagagtatctctgtttcagactctgccatg
gagggacatgatgaacccgcagctaagaagagaagagtggccaaagaggaaggagaaaaa
ctgattcggggatttttatcaaaattcaaagaaattccgctgtcctccatgacagacgaa
gaagctatggccgagatagaaaaactgaagagtgaaattaaaggcaagaataacccttat
gtggaagatatactggcaaggggatgctga
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