KEGG T04123: 100370554

Saccoglossus kowalevskii (acorn worm): 100370554

Entry

100370554         CDS       T04123

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like

K14404

cleavage and polyadenylation specificity factor subunit 4

Organism

sko Saccoglossus kowalevskii (acorn worm)

Pathway

sko03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:sko00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100370554
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sko03021]
    100370554
   03019 Messenger RNA biogenesis [BR:sko03019]
    100370554
Transcription machinery [BR:sko03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     100370554
Messenger RNA biogenesis [BR:sko03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     100370554

SSDB

Motif

Pfam:

zf-CCCH zf_CCCH_4 Torus zf-CCHC zf-CCCH_2 zf-CCCH_3 zf-CCCH_RBM22 zf-CCCH_12 zf-CCCH_4 zf-CCHC_2 zf-CCHC_3 Nab2-like_zf-CCCH_

Other DBs

NCBI-GeneID:

100370554

NCBI-ProteinID:

XP_002734616

UniProt:

A0ABM0GPR9

LinkDB

Position

AA seq 276 aa
MQNIVSNVSNIKFDIELALEQQLGSIPLPFPGMDKSGSAICVFFKQGDCLKGGSCPFRHV
RGDRSVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECFFFSKFGLCSNKECPFLHIDPESK
IKDCAWYDRGFCKHGPHCRNRHTRRVICVNYLCGFCPDGKNCKFQHPKFDLPVVNDPVSA
QKKASITCHSCGEPGHKAAMCPKFPVTATEQHIQVMGMSDLTERPQIPKGPPRPLESVTC
FKCGEKGHYANRCPKGHLAFLSPALSHVDAQKQNQM

NT seq 831 nt +upstreamnt +downstreamnt
atgcagaacatagtatcaaatgtctcgaacataaagttcgacatagaactggctttagag
cagcagttgggcagtataccattgccttttcctggaatggataaatccggatctgcaata
tgtgtgttctttaagcaaggggactgcttaaaaggtggaagttgtccattccgacatgta
cgtggtgatcgcagcgttgtttgcaaacattggctgaggggtttatgcaaaaaaggagac
cagtgtgaatttcttcatgagtatgacatgacaaaaatgccagaatgtttctttttttca
aaatttggtctgtgcagcaacaaagagtgtccctttctacatatagatcctgaatcaaaa
ataaaagattgtgcgtggtatgatagagggttctgtaaacatggtccacactgcagaaat
agacacacaagaagggttatatgtgtcaattatctatgtgggttttgtccggatggcaaa
aattgtaaattccaacatcctaaatttgatttaccagtggtaaatgaccccgtgtctgca
caaaagaaagccagtattacctgtcacagctgtggggaacccggacacaaagcggccatg
tgtcccaagtttccagtcactgctactgaacagcatattcaagtgatgggtatgagtgac
ttgacagaacgtccacagatacctaaaggaccccctaggcctctggaaagtgttacatgc
tttaagtgtggggagaaaggtcactatgctaatcgctgcccgaaaggtcatctcgccttc
ctgagtccagcattatcacacgtggatgcacagaaacaaaaccagatgtag

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