Saccoglossus kowalevskii (acorn worm): 100370697
Help
Entry
100370697 CDS
T04123
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100370697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100370697
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100370697
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100370697
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
GLTT
PMG
Motif
Other DBs
NCBI-GeneID:
100370697
NCBI-ProteinID:
XP_006813651
LinkDB
All DBs
Position
Un
AA seq
2438 aa
AA seq
DB search
MNLDSLSLALSQISYSVANLTKKNYKSSVADISRLVSQHGPEADRHLFRCLFSHVDFSGD
GRSSGKDFHQFLIQECATLITKPNFISTLCYAVDNPLHHQKSLKASTQLFPQLSKVLKLT
RVQEVVFGIALQHSTNRDTRTYAAQFAKQKLPDLLRSYIDSDISSNQEGGLNDIAVEVLH
LLLTHLLHGPKDHSGIGTDQKEAFLNTLKRDFPRHQVPVVLAPLLYSEKQDVTMDRLIGN
VVNVPKAMMDGSLADTLLEIGYGCCATVEECRNTLVQFGVNCITPISVAKVLGMMARTHT
GLADQMSLQSLTAPGGNIWSDGKDKGDQGNQINTWNVDIFVEVAKDLAPHINWKEVIFEL
DHPGFHLKDAQALRLIKLAYMRGLQELFPVEFIYRTWKNREGQLSWIQQALNNPEIFCFA
DYPCHTAVTDILKAPPDDENREIATWKSLDLVETLLRLSETGKYDQVKSLFTFPIKNCPD
VLLLALLQAQPTWNTLRHELVSTLLPIFLGSHPNSAIVLHYAWHGQGQSPTIRQLVMHAM
AEWYIRGDNFDQTRLSRILDVAQDLKALSMLLNGTPFAFVIDLACLASRREYLKLDKWLS
DKIREHGEPFIQACVTFLKRRAPQVLGGGLLDKSDISKAGQLPPETIGTMLACLQACVGN
VQQDISETILTMVGNSSHLLKSRQPPGVITKNPVSSSLPGFPGIGTQGTGSQVLGTQGLG
TQGFGSQGLGTQGHGSQGLGTQSLGTQGLGTQGLGTQGLGTQGLGTQGLVTQGLGSQIDP
LANSISSLSLGTTTPTSTMSGFPSHLGSPLNAPQSPQKQFPNLTGTSGLSSMAPLSQMQA
NFGGGSGGGGGFGNAMMNAGSTDLFKQSRTPASLGALNPSAAQAFDQAGTKTTSPALRPG
ELEPKNFSSDLSNIWPEMNQTFSKDIDDEANSYFQKIYNQHPEPTMSVDEVLDMLKRFKD
SPVKKEREVFLCMLRNLFEEYRFFPQYPDRELHITACLFGGIVEQGLVTYMALGIALRYV
LEALRKQHGSKMYYFGISSLDRFKTRLKDYPQYCQHLASIPHFSQFPEILIEYVQYGQQS
REPPVRLSTQTSSIPPISTPTILPVMAKTTAVTTTTTTTTVATTTTKASTKTTSAVKGTR
EVPPSIANTTNIDTLLTNTPEDEQLEPPESIQDKVFFIFNNLSQSNLQPKCDELKDLIGE
EYLPWVSQYLVQKRASIEPNFHMLYSNFMDVLKHNKFCEMVLKETYRNIKVVLLNSNKSS
ANFSDRTILKNLGHWLGMLTVYKNKPILQIDLDLKSLLLEAYHKGQQEMLYVVPFVAKVL
ESCAKSRVFKPPNPWTMGIMNALAEMHTEQDLKLNLKFEIEVLCKTLNLDINDLAPGTLL
QDTERLIALEEQIFSPVIKVEENLPASTTTTTTSSADTTTVAATTTSTTTTATPVPPQPQ
FSFHDLNVSSLAGLAPHIAINNQIALFQANLTLKQCVRPSVDRAVQELVTPVVERSIKIA
MTTCEQIVKKDFALDPEESRMRAAAHHMVRNLTAGMAMITCREPLMVSISNNFKNNCLTA
LKGATTQQKEMIEQAATVVATENVELACAFIQKCAVEKAVPEMDKRLATEFELRKHARNE
GRRYCDPMVLTYQAERMPEQIRLKVGGVTLNQTAVYEEFARNIPGFLPTNDASQPTGFLA
KPMQVTDKSYATDEITQIYDKCAGDIEQYLQCTVATPNNPLLSAIHSLLEAVLLARNSRE
IVTALALLQKAVEGLLEGLNPQIATDPELSMRFRDCHLLVLKALQDHRAYGPQWTNKQVT
RVLCETRTECRYNLDAVDCLIRNHLVNLQAYDMHLAQSLENGLNFLAVAFAMQLVKYYLI
DEKMSNVCNEADLFNTLQTLVRIASHSANPPEGLTQLVDVIRQNHDTTFLDKAPGGPTSM
MHSGISQAREFDDPPGLREKTEYLLREWVNMYHSPAAGRDSTKAFSAFVGQMHQQGILKT
DDLITRFFRLCTEMCVELCYRALAEQSSHSPTLIRAKCFHTLDAFVRLIALLVKHSGDAT
NTVTKINLLNKVLGIVAGVLLQDHEVRHTEFQQLPYHRIFIMLLLELNAPEHVLESINYQ
VLTAFCNAFHVLRPSKAPGFAYSWLELISHRIFIARMLAILPQQKGWPMYAQLLIDLFKF
LAPFLRNAELAKHTTLLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILS
AFPRNMRLPDPFTPNLKVDMLNEITHPPRILTNFAAMIQPSSFKKDLDSYLKTRSPVTFL
SELRGHLQVSNDPGIRYNIPLTNALVLYVGSQAIAYIHSKGSAPSMSTITHSSHMDIFQN
LAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLI
VNRPHPWGLLITFIELIKNPNFKFWNHEFVHCAPEIEK
NT seq
7317 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgttgtcgctggccctgtctcaaatcagttactcggtggctaatctg
accaagaagaactacaagtcaagtgttgctgatatttctcgtcttgtttctcagcacgga
ccagaagcagatcgtcacctgttccgctgtcttttttcacatgttgattttagtggtgat
ggtaggagtagtggcaaagattttcaccagtttttgattcaagagtgtgcaacgctaatt
accaaaccaaattttatatcgacgctgtgttacgcagttgacaatcctttgcatcatcag
aagagtttaaaggcttccactcagctttttccacagctgagtaaagttttgaaattaact
agagttcaagaagtagtatttgggattgcattacaacattcaaccaatcgggacaccaga
acatacgccgctcagtttgcaaaacagaagctacctgatttattaaggtcttacatagat
tcagatattagtagtaatcaagaagggggactcaacgatatagcagtcgaagtactgcat
ttattactcacacacttattgcacggaccaaaagatcattctggtattggtactgatcag
aaagaagcttttctcaatacactaaaaagggactttccaagacatcaagttcctgtcgta
ttggcaccgttattatattctgagaaacaagacgtcaccatggatagattgattggaaat
gttgttaatgtcccaaaagccatgatggatggctccctagctgacactttgctagagatt
ggttatggatgttgtgcaactgtggaagaatgtcgcaacacacttgtacagtttggtgtg
aactgtatcacaccaatctctgtggccaaggttttaggcatgatggctcgaacccacact
ggattggcagatcaaatgtcattacagtccttgacagcccctggtggtaacatatggagc
gacggtaaagacaaaggggatcagggaaaccaaataaacacatggaatgtggacattttt
gttgaggtggccaaagacttagcacctcacatcaattggaaagaagtaatttttgagttg
gatcatcccgggttccatctcaaagatgcacaggctctcagacttataaagctagcctac
atgagaggtttgcaagaactgttccccgttgaatttatctatagaacttggaaaaataga
gaagggcagttatcatggatacaacaagctctgaataatcctgagatattttgttttgct
gattatccatgccatactgctgtcactgatatactcaaagcgccccctgatgatgaaaat
agagaaattgctacatggaaatcgctcgacttagtagaaacgctactgaggctatcagaa
actggcaaatacgaccaagtgaaaagtctgtttacatttcctataaagaattgtccagat
gttttgctgttggcattattgcaagctcagccaacatggaacactctgagacatgaattg
gtatcaacgttactgcctatatttttggggagccatcccaactctgcaatagtattacat
tatgcatggcatggtcagggtcagtcaccaaccataagacagcttgtaatgcatgccatg
gctgaatggtatatcagaggagacaactttgaccagactagactctccaggatattagat
gttgcccaggatctgaaggctttgtcaatgctgctcaatggtactccatttgcctttgtc
attgacttagcatgccttgcctcgcgtagggaatacctcaagcttgacaaatggctctct
gataagattcgagaacatggggaaccgtttatacaagcctgtgtaacattcttgaaaagg
agagcaccgcaagtgttaggtggaggcttactggataaatctgatatctctaaagctgga
cagttaccaccagaaaccataggaactatgctggcatgtttacaagcatgtgttgggaat
gtacaacaagatatatctgagaccatacttactatggtgggaaactcaagtcatttactg
aaatcaagacagccacctggtgtaataacaaaaaatcctgtgtcaagtagtctccctggc
tttccagggatcggtacacagggaactggaagccaggtacttggtacacaaggtcttgga
acacagggttttggtagccagggtcttgggacacaaggacatggcagtcaaggattaggc
acacagtcgctcggtacccaaggacttggaacccagggacttggaacccaaggacttgga
acccagggacttggaacccaagggcttgtaactcaggggcttgggtctcagattgaccca
ttggccaacagcatatcatccttatcgttgggtactacaacacccacaagtacaatgtca
ggatttccatctcatttgggttcacctctcaatgcaccacagtctccacaaaagcaattt
ccaaatcttactggaacgtctgggctctcgtcaatggcacctttatctcagatgcaagct
aactttggtggaggaagcggtggtggaggtggttttggcaatgctatgatgaatgctggc
agcactgatctattcaaacaatcaagaacacctgcatctttgggagcattgaatccttct
gctgctcaggcatttgaccaagcaggcacaaaaacaacaagccctgctctcagaccaggt
gagctggaaccaaagaatttcagtagtgatttgtccaatatttggccggaaatgaaccag
acgttctcgaaagacatagatgatgaagctaatagctattttcaaaaaatctacaaccag
catccagagccgacaatgtctgtagatgaggtacttgatatgttaaagaggtttaaagat
tcaccagttaaaaaggagagggaagtgttcctatgcatgctgcgtaatctctttgaagag
tacaggttttttcctcagtaccctgaccgtgaactacacatcactgcctgcttatttgga
ggaattgttgaacaaggtcttgtcacgtatatggcattaggaatagcacttcgatatgtc
ctggaagcgctcagaaaacaacatgggagcaaaatgtattactttggtatttcgtcactg
gatagatttaaaacaagacttaaagattatccacagtattgccaacatctagcatcaata
ccccacttcagtcaattcccagagatacttattgagtatgttcagtatggtcagcaatct
agagaaccaccagtacgattatcaactcaaacatcaagtataccgccaatctctacgcca
actattctacctgtgatggccaagacaactgctgtaaccacaactaccaccacaaccact
gtagctaccacaaccactaaagcttctaccaaaactacgtctgctgttaaaggaacaaga
gaagtgccgccttctattgccaataccaccaatattgatactttgttaacgaacacacca
gaggatgaacaattagaaccaccagaatcaatacaggacaaagttttcttcattttcaat
aatttatctcagtctaacttacaaccaaagtgtgatgaattaaaagacctcattggtgaa
gagtacctaccatgggtttcccagtacttggttcagaaaagagctagtatcgaacccaac
ttccacatgctgtattccaacttcatggatgttctcaaacataacaagttctgtgaaatg
gttctgaaagaaacctatagaaatatcaaggtggttcttctgaattcaaataaaagcagc
gctaacttttcagacagaacgatcttgaaaaatctaggtcattggcttggtatgttgaca
gtgtacaagaacaaacctattttacaaatagatctggatttgaaatcacttttactggaa
gcttatcacaaaggtcagcaggagatgttgtatgtggtgccatttgttgctaaagtgttg
gagtcatgtgcaaagagcagagtattcaaaccacctaatccatggaccatgggtattatg
aatgccttggctgaaatgcatacagaacaggatcttaagcttaatttgaaatttgaaatt
gaagttttgtgcaagaccctcaatttagatatcaatgatctggctccaggaaccctacta
caagacacagagaggctgattgctttggaagaacagatattctctcctgttatcaaagtc
gaggagaatcttccagcatctacaactacaaccaccactagttcagctgataccacaaca
gtagctgctaccacaacaagtactaccacgactgccactccagtacctccacagccccaa
ttcagttttcatgatctcaacgtatcatcgttggctggtctggctccacatattgctatc
aataatcagattgctcttttccaagctaatttaacattgaagcagtgtgtgagaccatca
gtagaccgtgccgtccaggaattggtgactccggtagtggagagatctatcaagatagca
atgacaacgtgtgaacaaattgtcaagaaggactttgcattggaccctgaagagtcgcgg
atgcgtgctgcagcccaccacatggtacgcaatctgacagctggcatggccatgataacg
tgtagggaaccactcatggttagcattagtaataatttcaaaaataattgcctcactgct
ctgaagggtgctacaactcaacagaaagaaatgatagagcaagcagctacagtggtggct
acagagaatgtggagttggcatgtgctttcatccaaaaatgtgctgtagaaaaagctgta
ccagagatggacaagaggctggcaacggaatttgaattgcgtaaacatgctcgcaatgaa
ggtcggcgttactgtgatcctatggtgcttacataccaagcagaaagaatgcctgaacag
atacgactcaaggttggtggtgtaaccctaaatcagactgcagtatatgaggaatttgca
cgcaatattcctggatttttaccaaccaatgatgctagtcaaccgacaggtttcttagca
aaaccaatgcaggtaactgacaagtcatatgccactgatgaaataactcagatttatgat
aagtgtgccggagacattgaacagtatctacagtgtacagtagctacacccaataaccca
cttctgtccgccatacatagtctactggaggcagtactgctggccaggaactccagggag
attgttacagcgctggcacttctgcagaaagctgtggaagggttattagagggtctgaat
ccccaaatagctacagatccagaactgagcatgaggtttcgtgattgtcatttattggta
ttaaaagctttacaggatcacagggcatatggaccacaatggaccaacaaacaagtcacc
agagtgctatgcgagacaagaactgaatgcagatataatttagatgctgttgattgccta
ataagaaatcatcttgtgaatctccaagcatatgatatgcatttagcacagtcattggaa
aatggactgaatttcttggctgtagccttcgccatgcagcttgttaagtattatttaatt
gatgagaaaatgagtaacgtgtgcaatgaagctgatctctttaacactttacaaactcta
gttaggatcgcatcacattcagccaacccaccggagggccttacccagcttgttgatgtg
attcgtcagaatcatgatactacattccttgataaagcaccgggtggtccaacatccatg
atgcattcaggtatatcgcaagcaagggagtttgacgatccccctggtctgcgtgagaaa
acagagtatttacttagagaatgggtcaatatgtatcattcaccagctgccggcagagac
agtacaaaggcattctctgcatttgttggacagatgcaccagcagggaattttaaaaaca
gatgacctgatcaccagattctttcgtctgtgtacagagatgtgtgtagaactttgctac
agagcattggcagaacaatcatcacatagtccaactctgatacgtgccaaatgttttcac
acattagatgcttttgtgcgcttgatcgcattacttgtaaaacattctggggatgccacc
aatacagttaccaaaattaatcttcttaacaaggtgcttggtattgtggctggtgtcctg
cttcaagatcatgaagttcgtcatacagaattccaacaattgccttaccaccgtatattt
ataatgctgctcttagaactcaatgcacctgaacacgtactggagagtattaactaccaa
gtattgactgcattctgcaatgccttccatgtgttgaggcccagcaaagcacctggtttt
gcatattcatggctggaacttatatcccacagaatattcattgcaagaatgttagcaata
cttccacagcaaaagggttggccaatgtatgcccagttgctgattgatttgtttaagttt
ttggccccgtttttaaggaatgctgagttggccaaacatacaacactactgtataagggt
actctacgagtattattggtgttactccatgatttcccagaattcctctgtgattatcac
tatggtttctgtgatgtcataccaccgaactgcattcagatgcgtaacctcattctcagt
gcgtttccaaggaatatgcggctacctgatccattcacgccaaacttgaaggttgatatg
ctgaatgaaataacccatcctccaaggatacttaccaactttgctgccatgatacagccg
tcatcgttcaaaaaagatcttgattcatacctgaagacgagatcaccggtgactttctta
tccgaacttcgtggtcatctacaagtgtctaatgatccgggtattagatacaatattcca
ttaacaaatgctttagtcttgtatgtcggttcccaggctatagcatatatacacagcaaa
ggcagtgcaccctcaatgagtactattacacactcgtcacatatggatatcttccaaaac
ttagcagtggatcttgataccgaaggtcgttacttatttctcaatgcaatagcaaatcaa
ctgcgctatccaaacagtcatacccactatttcagctgcacacttttatatttgtttgct
gaagctaacacagaagcaatacaggaacagatcaccagggtactgttagaacgtcttata
gtgaacagaccacatccttggggcttgttgattacatttattgagcttataaagaatccc
aattttaagttttggaatcatgagtttgttcactgtgcaccagaaatagaaaagtaa
DBGET
integrated database retrieval system
