Saccoglossus kowalevskii (acorn worm): 100371629
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Entry
100371629 CDS
T04123
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1-like
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sko04054
]
100371629
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100371629
Pattern recognition receptors [BR:
sko04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
100371629
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RIG-I_C
ResIII
Helicase_C
CARD_2
AAA_11
nSTAND3
ATP-synt_ab
RIG-I_C-RD
AAA_30
CARD
Motif
Other DBs
NCBI-GeneID:
100371629
NCBI-ProteinID:
XP_002737902
LinkDB
All DBs
Position
Un
AA seq
1017 aa
AA seq
DB search
MSSLNSTHTCRNNSLEEEPDYEDPIEIKVLRKQRGDFMHGIIPSQIVPHLTCLTRADESC
ILAATSRKGDIEGAGVLLYHLMTKKDVWYEDLLKALRNNDVKLEHLATSLENEVKKRKEE
VYDIEMTCEDSYSESYDTGNLESPPSQNCNQVYACHIITESGTKPGIKTELHVPGVPDYP
PPPYSKVEHGYDQALSVDNEGCHGDVIKQDGGNIQSKRVYESEETAKESLEKEVISPAAE
STPVGTSESQTRHVINYEVLKPRGYQEELAGPACKGLNSIICAPTGTGKTHVAMMVSKNH
MHRAMEVQAAGNSSTNAQTFVTVQNPDNKVELEKYVSIPDKFTTIAATRSPDPFQDRIAE
TMAEIEHKTGDIESEETAKESLEKEVISPAAESTPVGTSESQTRHVINYEVLKPRGYQEE
LAGPAYKGLNSIICAPVGTGKTHVAMMVSKNHMHRAMEVQAAGNSSTSKGKILLIVHMNR
LLNQTYKRFKTYLPLFKTGKISGVTTSKLTFEHLAKINDIVITTAGFFENILEKKTTSIS
AFSLIIIDECHYAMKNHSYNRIMTEYLKIKLAGCSAQLPQIVGLTACPGTGGKSQLQAAQ
THLLKLCANLDAQTFVTVQNPDNKIELEKYVSKPDKFTTIAATRSPDPFQDRIAEIMAEI
EHKTGDIETCPQRGTEEYEQFIITTRNETLNGNKHETVQCCEHLIQYNKALQISSMCRMS
DGLKIIDGFYNERWQRGQHETTSIEKYLYKLFRRNSSELFDISEDENKYPNPKVLKLKEN
LAEEIKKMDEELRGIIFVKTRALARAIYECIVDDKTLKSLKPAILVGVKSTGVECMTQAE
QDTRLRKFALGHCKLLVATSVAEEGLDIKECHMLIRYNYSTNVISLRQSSGRARALESTE
HFIGDEDLATRDSVNVFLDQQMEKAIDLIQDMPQAQLQGTVRHTQMNDIAEVYEKESKHI
PVKFKSNSVKLYCTGCGKYVCNGNDVYIYDESSHIIVDKAIIKNIATIMTTRSVMLG
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcactgaattctacgcatacttgccgtaacaacagtttagaggaggaaccggac
tatgaagacccgattgagatcaaggttcttcgaaaacaacggggcgattttatgcatggc
attataccgtcgcagattgtccctcatttgacatgtctgacccgtgctgacgaatcgtgt
atcctggctgcgacatcacggaaaggtgatatagaaggcgcgggagttctattatatcac
ctcatgacaaaaaaagatgtctggtatgaagatttgttgaaagcacttcgtaacaatgac
gtgaagctggaacacctagccacatcactcgagaacgaagtgaagaaaagaaaggaagag
gtatatgatatagaaatgacatgtgaagatagctacagtgaaagttatgacacgggaaat
ctcgagtctccgccaagccagaactgcaatcaagtatatgcttgtcatatcattacagaa
tctggaactaaacctggaatcaaaactgagttacatgttccgggtgtacctgattaccca
cccccaccttactcaaaagtcgagcacggttatgatcaagctctatctgtcgataatgaa
ggttgccatggcgatgtcatcaagcaagatggtggcaatattcagtctaaaagagtgtat
gagagtgaagaaacagcaaaagaaagtttagagaaagaggtaataagtccagctgcagaa
tctacaccagtaggtaccagtgagagtcaaacaagacatgtcataaactatgaagtccta
aaaccccgtggttaccaggaggaacttgctgggccagcctgtaagggattaaattctatt
atatgtgcacctacgggtacaggaaaaacacacgtagctatgatggtgtccaagaatcac
atgcaccgtgctatggaagtccaagcagcaggaaatagcagcaccaatgctcagactttt
gtcactgtgcaaaaccctgacaataaagtcgagctcgaaaagtacgtcagtatacccgat
aaattcactacaatcgccgccacgagatctcctgaccctttccaagacagaattgctgaa
actatggcagaaatcgaacacaagactggcgatatcgagagtgaagaaacagcaaaagaa
agtttagagaaagaggtaataagtccagctgcagaatctacaccagtaggtaccagtgag
agtcaaacaagacatgtcataaactatgaagtcctaaaaccccgtggttaccaggaggaa
cttgctgggccagcctataagggattaaattctattatatgtgcacctgtgggtacagga
aaaacacacgtagctatgatggtgtccaagaatcacatgcaccgtgctatggaagtccaa
gcagcaggaaatagcagcaccagcaagggaaagatactgttaattgtccacatgaatcgc
ctccttaaccagacatataagcgttttaagacgtacctaccattgtttaaaactggaaaa
attagtggggttactacctcgaaactaacatttgaacacttggctaagatcaacgacatt
gtcataacgacagctggtttctttgaaaacatcctagaaaagaaaactacatcaatatca
gccttttctctgataattatagatgagtgtcactatgctatgaaaaaccattcttacaac
cgcataatgacagagtatctaaaaatcaagctagctggttgttctgcccagcttccacag
attgtcggtttgacagcatgccctggaactggaggtaaaagtcaactccaggctgcacaa
acacatttattgaaactatgtgcaaacttagatgctcagactttcgtcactgtgcaaaat
cctgacaataaaatcgagctcgaaaagtacgtcagtaaacccgataaattcactacaatc
gccgccacgagatctcctgaccctttccaagacagaattgctgaaattatggcagaaatc
gaacacaagactggcgatatcgaaacatgcccacaacgaggcacagaggaatatgaacaa
ttcatcatcacaacgaggaatgaaacattaaatgggaataaacatgagactgtacagtgt
tgtgaacacctgattcaatacaataaagctctgcaaataagtagcatgtgtcgcatgagt
gatgggttaaagataatagacggcttctacaatgaacgatggcagcggggtcagcacgag
accacttctattgagaagtatctgtacaaactattcagacgtaattccagtgagctgttt
gacattagtgaagatgaaaacaaatatccgaatcccaaagttttgaaattgaaagaaaat
cttgctgaagaaattaaaaaaatggacgaagaactcagaggaattatttttgtgaaaaca
agggctttggcacgagcaatatacgagtgtattgtcgacgataaaacactgaaatcactg
aaacccgctatcttggttggagttaaatcgacgggtgtggagtgtatgacgcaagctgag
caagatacccgtctgcgaaagtttgcacttggacattgcaagctgttggtggcaacaagt
gttgccgaagaagggttagacatcaaagagtgccatatgttaatcagatacaactattca
accaatgtgatatcactgaggcagtcaagtggtcgagcacgtgcgctggagagcacagaa
catttcattggagatgaagatcttgctacgcgagatagtgtaaatgtttttctcgaccag
caaatggaaaaagcgatagacttgattcaagatatgccgcaggcgcaactgcaaggcact
gtgcgacatacacaaatgaatgacattgctgaagtttatgaaaaagaatcgaaacacatt
cctgtcaaattcaagtcaaattctgtcaaattgtattgcactgggtgtggcaaatatgta
tgtaacggaaatgacgtatatatttatgatgagagctcccatataattgtagataaggcc
attattaaaaacatcgccaccataatgaccacaagaagcgtgatgctgggataa
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