Saccoglossus kowalevskii (acorn worm): 100371816 Help Entry 100371816         CDS       T04123                                  Name (RefSeq) collagen alpha-1(XI) chain-like   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism sko  Saccoglossus kowalevskii (acorn worm) Pathway sko04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sko00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     100371816  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sko00536]     100371816 Glycosaminoglycan binding proteins [BR:sko00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100371816 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_3 Laminin_G_2 Motif Other DBs NCBI-GeneID:  100371816 NCBI-ProteinID:  XP_006814015 UniProt:  A0ABM0M1X4 LinkDB All DBs Position Un AA seq 1659 aa AA seqDB search MARPRKYSRHNSSPWESVLFFSLFAAVFSCTKCTVVPIPPGATDILEVAGFRNEKQLRGV HKADGFCLDRPVSETSRYKLGTSDTAFRLEEEAQISIPTLELFYDDFPDDFSIIATVRSE KTSETSLVTIYGSDGIAQLGIELSNRMTKFIYQDYYPRMPGDDMTTFPADIADGNWHRIA FSVRGDMITMLSDCKNNYTQTLGRDPFSKIDTDGIVVIGRNLRKPTIFNGDIQQLIVTRS PYDAYDYCTLYTPDCNTPLPEYPQNEEAGSTPDGGFITDFPPYVPGTGGQGQKGQKGEPA VLEPGVFIPGPPGPQGPQGPEGPMGYDGPPGPQGEKGAKGDEGRDGFNGERGFPGAPGPV ILIPSAISDGSDHKGPNSGAMAAFTNLLQTQRNALIGPSGPIGLTGKIGPPGYPGTLGPK GDEGDMGPSGPPGTPGPQGLPGKQGRRGRSGKDGMRGSPGAVGTKGDRGFDGLPGMPGPK GHMGNPGPQGLMGPAGITGEPGDDGQSGPMGPSGEPGPRGLPGPRGPTGLQGVPGIPGGP GLEGPKGSSGLPGQPGLRGNPGIQGSTGPPGPQGPMGSPGDPGPEGKPGMPGLPGIDGPP GHSGKDGPSGDKGDTGVGGPQGPLGYAGPIGMKGDRGIRGQTGSKGQKGAEGYQGFKGDM GPKGNRGANGETGPRGPEGNNGVKGIQGIQGDAGAMGPPGEKGKMGIPGLPGYPGRMGQK GSLGPSGRRGRTGLKGSRGHPGTNGEPGSQGSPGPRGQRGARGQRGTRGPKGSEGQEGPE GQQGERGFEGKQGPQGPPGVIGPQGPSGERGPLGERGVPGSPGPSGEPGLPGEAGKEGLP GPPGPVGPEGKIGPPGIQGFPGDRGMPGAEGPIGLKGDMGPSGPPGPQGSSGPPGPPGEA GSIGLPGQPGPVGSPGPAGDKGSIGDDGPPGPAGRDGQPGIRGLPGPPGPEGPPGEEGET GEPGPPGMKGSKGARGLSGPEGPAGERGPEGMPGPSGEPGEPGIPGPVGPAGQKGSDGSR GAPGPQGLPGQQGMPGTPGSKGEIGDDGPRGVQGAAGPPGKPGDRGAEGVPGMVGPRGPE GDRGDKGNQGEQGPRGFPGERGPTGSIGEKGNQGDEGAQGQPGAYGPRGEPGNEGPKGHR GPSGPPGPPGSSGVQGPPGKDGTKGERGQRGEIGQTGAPGPQGDLGPPGPRGSPGPPGTN GQEGEQGPKGERGDKGELGPQGMPGATGPMGRPGPTGADGPRGPPGPEGAQGGEGPAGLP GLAGPMGMTGDKGDKGEQGVKGNKGDKGPIGLTGPNGPLGEKGSRGEVGQEGDMGPKGEP GLTGPPGPLGPDGPPGLPGIEGGTGDKGDKGDVGPKGDLGLTGPAGPPGPPATIENLQQL VEMGLLDATRQMMRDEAERRRRAAGDENDLPPEYTDGLEEIFGSLEALKIEIEQMKRPIG TRFNPARTCKDLYMCHEDFPDGMYWIDPNQGCSKDAIEVFCNFTAGGETCVQPDESTGKL VAGSFDESILDDVNASVTPRGYRKARPGDWFSEFKQGDLISYSNVGVVQMTFLRLLSASA KQNFTYTCHHSVGWYDQASDNYDKAVKLMGANEEEFAYDSNYLPTVIKDGCKSAPKRSST VFEIETTKLHQLPIIDFMPGDFGKPDQRFGYEAGPICFN NT seq 4980 nt NT seq  +upstreamnt  +downstreamnt atggcccggcctaggaaatatagtcggcataattcaagcccttgggagagcgttttgttc ttcagtctatttgcagcagtcttttcatgcacaaaatgcacggttgttccaattcccccg ggcgcaacagatattttagaggttgccggatttagaaacgaaaagcaattacgaggagta cacaaggcagacggcttttgtttagacaggccagttagtgaaacgtcgagatataaactg ggcacatctgatacagcctttcgactagaggaagaggcgcaaattagcataccaacgctg gagttattttacgacgattttcctgacgatttttccatcattgccacggtgagatcggag aagacatcggaaacaagtttggttacgatctacgggagtgatggaatcgcgcaactcggc atcgagcttagcaacagaatgacaaagtttatctaccaagattactatcccagaatgcct ggcgacgatatgaccacttttccagctgatattgcggatggcaattggcataggatagct ttcagtgttcgtggtgacatgataacgatgctgtcagattgcaagaataactacacacaa acactcggacgtgacccattttcaaagatagacacagacggcattgtggtcatcgggagg aacctacgaaaaccaaccatttttaacggagatatacaacagctgatagttacacgtagt ccatacgatgcttatgactattgtacactgtatacaccagactgcaacacaccattgccc gaatatccacagaatgaagaggccggatcaacaccggacggaggattcataacagatttc ccaccttatgtgcctggtactggcggacaaggacaaaaaggacagaaaggtgaacccgcg gttctcgaaccgggtgtgttcataccaggaccgccgggcccacaaggaccacagggtccc gaaggtccgatgggatacgatggcccgcctggtccacagggagaaaaaggtgcaaaaggt gacgaaggtcgtgatggcttcaatggggagaggggtttcccaggcgcacctggacctgtt atacttatacccagtgccatctcagatgggagcgatcacaaaggacccaatagcggagca atggctgctttcactaatttattgcagacgcaaaggaacgctctaattggcccatctggt ccgattggtttaactggtaaaattggacccccgggttatccaggaactcttggccccaag ggagatgaaggtgacatgggcccatccggcccaccgggaactccaggaccacaggggtta ccgggcaaacagggaagaaggggaagaagtggcaaagatggcatgagggggagtccgggc gccgttggtacaaagggggatcgtggtttcgatggattgccaggaatgccaggaccaaaa ggtcacatgggcaatccgggaccacaagggctgatgggtccggccggtattaccggggaa ccaggtgacgacggacaatccggtccgatgggcccgagtggtgagccaggtcccaggggt ttacctggtcccaggggaccaacaggactacagggtgtgccgggtatacctggtggtcct ggtttggagggtccaaagggtagcagcggacttcctggacaaccaggtctgaggggaaat cctgggattcaaggttcaacgggtccacctggcccacaaggacccatgggatctcctgga gatcccggtcctgaaggtaagccaggcatgccgggattaccaggaatagatgggccaccg ggtcactctggaaaagatggtccgtcaggagacaagggagacacgggagttggcgggcct caggggcctcttgggtatgctggtccaattggaatgaaaggagacagaggtatacgtggt cagactggtagtaaaggtcagaagggtgctgaaggttaccagggatttaaaggtgacatg ggtccgaaggggaataggggggccaatggtgaaacaggtccacgggggccagaagggaat aacggtgttaagggtatccaaggaatacagggcgatgccggtgcaatgggcccgcctggg gaaaagggcaagatggggatacctggtttaccaggatatccaggtagaatgggacagaag ggttcactgggaccgtcaggtagaagagggagaaccggtctgaaggggtcaaggggtcat ccaggtacgaacggtgaaccagggtcacagggatcaccggggccgaggggacagcgaggt gctagaggtcaaaggggtacgcgtggacccaagggttctgaaggccaagaaggaccagag ggacaacaaggagaaaggggatttgaaggaaaacaaggacctcagggtcctcccggtgta attgggccacagggtccgagtggcgagagaggtccccttggtgaacgtggtgtgcctggg tcgccaggaccttctggagaacctgggttacctggagaggctggtaaagaaggacttccg ggtccaccaggaccagttggtccagaaggcaaaatcggaccaccaggaattcagggattt ccaggagataggggaatgccgggagctgagggaccaatcggtttgaagggtgacatggga ccgtctggtccaccggggcctcagggatcatctggaccacctggcccaccaggagaagcc ggatccataggcctaccgggtcaacctggcccagttggttcaccaggccctgctggagac aaaggctctattggagacgatggtccaccgggtcctgctgggagagatggtcaacctgga atcaggggacttcctggtccacctggccctgaggggccacccggagaagaaggtgagact ggtgaacctggtccgccaggaatgaaaggatctaaaggtgctcgaggattatctggtccc gagggtccagcaggtgagaggggcccagaaggaatgccaggaccatcgggcgaacctggg gagccgggtattcccggaccagtgggtccagctggacagaaaggaagtgatggatctcgg ggtgctcctggacctcaaggacttcccggacaacagggcatgccagggacccccggttct aaaggggaaatcggtgatgatggtccaaggggagtacaaggtgctgcgggacctccagga aaacctggtgatcgtggtgcagagggggtaccaggaatggttgggcctcgtgggccggaa ggagatcgtggagacaagggtaatcaaggtgaacaaggtcctaggggtttcccaggtgaa cgtggtccaacgggttcaataggtgaaaagggtaaccagggagatgaaggagcccaaggt caacctggggcgtatggcccaagaggagaacctggaaacgaaggtcccaaaggtcacagg gggccatcgggaccaccgggaccaccaggctcatcaggagtacaaggaccacccggtaaa gatggtacgaaaggagagcggggacagaggggagaaataggtcaaacgggtgcaccgggt ccacaaggagatcttggtccacctggtccgaggggatcacctggtccgcctggcaccaat ggacaggagggagagcagggtccaaagggtgagcgtggcgataaaggagaactgggcccg caaggtatgccgggagcaactggaccaatgggacgacctggaccaactggagctgatggg ccaaggggaccacctggacccgagggtgcacaaggtggggaagggccagctggacttcca ggcttagctgggcctatgggaatgacgggagataaaggcgataaaggagagcagggagtg aaagggaacaagggtgacaaaggcccaataggactcactggtcctaatggaccacttggc gaaaaaggaagtcgtggtgaagttgggcaagaaggagatatgggaccaaaaggagaacct ggtctcacaggtccacctggtccacttggtcctgatggtcccccaggtcttccgggtatt gaaggcggcactggggacaaaggtgacaaaggtgacgtaggtccgaaaggagatctaggg ttaactggacctgccggaccaccgggtcctccagcaacaatagaaaatctacaacagctg gtggagatgggattactggatgctacgaggcagatgatgagggacgaggcagaacgacga cgaagggcggcaggtgacgaaaacgatctacctccagagtacaccgatggattggaagaa atctttggatcattggaggcacttaagattgaaatagaacaaatgaaaagaccaataggt acgcggttcaaccctgcgaggacgtgtaaagatctttacatgtgtcacgaagactttcca gatggcatgtactggatagatcctaatcaagggtgcagcaaagacgctattgaggtattt tgtaatttcaccgcaggaggtgaaacctgcgtacagcctgacgagagcactggaaagctc gtggcaggctccttcgatgaatccatactagatgatgtgaacgcctcggtgactcctaga ggttatcgaaaggcacgccctggagattggttcagtgagtttaaacaaggagatctgatt agctactctaatgtcggtgtagtgcagatgacattcctacggctactgagtgcttccgct aaacagaatttcacatatacatgccaccactcagtgggttggtacgaccaagcatctgac aactatgacaaagctgtcaagctgatgggtgctaacgaggaagagtttgcgtacgattcc aattaccttcctactgtcataaaagatggatgcaagagcgcacctaagagaagcagcacc gtatttgagatagaaacaacgaaactgcaccagctcccaattattgattttatgcccggg gatttcggaaagcctgatcagcgatttggttatgaagctgggcctatctgttttaactaa

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