Saccoglossus kowalevskii (acorn worm): 100371899
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Entry
100371899 CDS
T04123
Name
(RefSeq) Werner syndrome ATP-dependent helicase-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100371899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100371899
03400 DNA repair and recombination proteins [BR:
sko03400
]
100371899
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100371899
Messenger RNA biogenesis [BR:
sko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
100371899
DNA repair and recombination proteins [BR:
sko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
100371899
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-GeneID:
100371899
NCBI-ProteinID:
XP_002742228
LinkDB
All DBs
Position
Un
AA seq
553 aa
AA seq
DB search
MAAHSGSCVGLDVEAIQRQYPDIKQLTGIQTKAIQALLSSDSDVFVVSRTGSGKSLCFYA
LPALRPSSVVIVLSPLLSIMEEQVLYLRAHDVTATYIGRNETEDEDIRNAKFQVLFGSPE
MIIGNEKWRKVWKSDVYQTRVLAIVVDEAHTVTLWGEDGPGEKAFRECFSRIGELRSLLT
APLMALTATASSSKRKKIMSRLNMKNTRTLMLVESPDRPNIKLGIAQVKRTENHIAESFE
WLLEILEKQKENMERYIIFCKSIQDCARIHFLFNTKLKSLGRMYNMFHSKTPNAIKQLIK
EDMSIDGNIKVLICTNAAGMGVNFHNVHNIIHYGPPRELDTFLQQIGRGGRDGKQSQQLL
IYNKTQIRKIDLDMLSYIRNQTECRRKILLQNYNVTCTGSSDAITHNHCCCDICEQSCTC
EQEVCPMQHVYYKETKRIPSSHVVRNVTTEQKQLLTSALDAYRVSINLDVCDESFIVPSE
ASHGFSEFVIGEIVDKCACLFSADDVMQHIHIWSYAHAKEVIKIINVIFDDSDIVYTNDE
DDIYSYDDIAYYD
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcacagtggaagctgcgtaggcttggatgtcgaggcaatacagcgacaatat
ccagacatcaaacaacttacaggcattcagaccaaagctattcaagctttacttagttct
gacagtgatgtgttcgttgtaagtcgcactggaagtggtaaatcgttatgtttttatgct
ttgccggctttgcgaccatcgagcgtggtgatagttttgtcaccactgctgagtattatg
gaggagcaggtgttatacctcagagcccatgatgtcactgcaacatacatcggaagaaat
gaaactgaagatgaagacatcaggaatgcaaaatttcaagtgctttttggcagtccagaa
atgataattggtaatgaaaaatggagaaaggtgtggaaatcagacgtctaccaaaccaga
gtgcttgccattgtagttgacgaagcccacacagtaacattgtggggtgaagatggtcca
ggtgagaaagcttttcgtgaatgtttttccagaattggtgaactgcgttcacttttgaca
gcgccattgatggctcttactgcaacagctagttcttccaagagaaagaaaatcatgtca
aggttaaatatgaaaaatacaaggacattaatgttggtagaaagtccagacagacctaat
atcaaattaggaattgcacaagtgaaaaggacagagaaccatattgctgaatcatttgaa
tggttgttagaaatacttgagaaacagaaggaaaatatggaaaggtacatcattttttgc
aagtccatacaggactgtgcaagaatccattttctgtttaatacaaaactgaaatcactg
ggtagaatgtataatatgtttcacagcaagacccctaatgcaattaaacaactaataaag
gaagatatgagcattgatggaaacataaaagtattgatttgcactaatgctgctggaatg
ggggtgaactttcacaatgtccataatattattcactatggtccacccagagaactggac
acttttctgcaacaaatagggagaggaggaagagatggcaagcagtcacaacaactgtta
atctacaataaaactcagattcgaaagatagatcttgatatgttatcatacattcgtaac
caaacagaatgtcgaaggaaaatcctccttcaaaactataatgtaacgtgtaccggtagc
agtgatgcaattactcataaccattgttgttgtgacatttgtgagcaaagttgtacatgt
gagcaggaagtatgcccaatgcaacatgtttattataaagaaaccaagaggatcccatca
tcacatgttgttagaaatgtgacaactgaacaaaaacagttactaacatctgcacttgat
gcttatagagtgtcaataaatcttgatgtgtgtgatgaatcatttattgtaccttctgag
gcgtcacatggtttttcagagtttgttattggagaaatagttgacaaatgtgcttgttta
ttttctgctgatgatgtaatgcagcatattcatatttggtcatatgcacatgcaaaggag
gtgataaaaattataaatgtaatttttgatgattctgacattgtctatacaaatgatgaa
gatgatatttactcatatgatgatattgcatattatgattga
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