Saccoglossus kowalevskii (acorn worm): 100372147
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Entry
100372147 CDS
T04123
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03015
mRNA surveillance pathway
sko03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100372147
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100372147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100372147
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
100372147
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
Motif
Other DBs
NCBI-GeneID:
100372147
NCBI-ProteinID:
XP_006825903
UniProt:
A0ABM0N0W2
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Position
Un
AA seq
655 aa
AA seq
DB search
MADAVDIDLYADDLEQEFNQDAEYGSSSANVDLYDDVITAPASNGQGVENFSDGVHSKAP
TTPTSLQTSSGKRVSLYVGNLTWWTTDQDLADSIMSVGVNDLQEIKFYENRANGQSKGFC
AVHVGSENSYRLIMDKLPKRELHGQLPVVTPCNRVSLNQFEMASRKGDSQMSGEGKAGPP
GSVGRGGPPGPPPRGPPGGVRTPGPGPPPRGGPRFPPGPPGPPRGMGPDRFPHQSPGPGA
PNMRPPPRGPPPGPPQQQGPRPGGPPPGYPGGPHHHGGPPPPPGMQGPPPDRGPHPSHHG
PMHPGGPRHPPPGPRGPPPPGPDPRGPPQRPEWDRPPGYGGPPPPGGPGGPPPGHGPMPG
PPPNRGPPPPGMHGPPHPGPPHPGPPPHGGPHGGPHGGPHGGPHGGPHGGPHGGGPPPGS
HPPPPGHGGPPAPHVNPAFFPPQGPPQERPPPNPPMDMYGQPIPRYEPEPYRSERNANPS
LPKDPTPVTYPFVISRHEMPPASPQLSETEFEEIMNRNRTVSSSAISRAVQDASNAEYAS
AIETLVTAISLIKQSKVSSDDRCKVLISSLQDCLHGIESKSYGSGSRRKDRGTSHDREER
GHRSSRDKSRHKERRDRSRSKDRGEYRERSRDREYRERDRDRDRDRERERERYRR
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctgtggacattgatttgtacgccgacgacttggaacaagaattcaatcag
gatgccgaatatggttcaagttcagctaatgttgatctgtacgatgatgtaataacagct
cctgctagtaatgggcagggagttgaaaatttttcagatggtgttcattcaaaggctcct
acaactcctacaagtcttcaaacatctagtggcaaaagagtttccctatatgttggaaat
ctcacatggtggacaactgaccaagatttagctgactctataatgagtgttggtgtcaat
gatcttcaagaaatcaaattttatgagaatcgtgccaacggccagtctaaaggcttctgt
gctgtacatgtaggctctgagaattcttatagacttatcatggacaaacttcctaaaaga
gaacttcatggacaactacccgttgttacaccatgtaacagagtgagtctcaatcagttt
gagatggcatcaagaaaaggagatagtcaaatgtctggtgaaggaaaagctggaccacct
ggtagtgttggcaggggtgggcctccaggaccacctcctcgaggaccaccaggaggagtc
agaacacctggtcctggaccacctccaagaggaggaccaaggtttccaccgggaccacca
ggaccccctcgtggtatgggtccagatagattccctcatcaatcaccaggaccaggtgca
ccaaatatgagaccaccacctcgtggaccacccccaggaccacctcagcaacaaggacct
agacctggtggaccaccacctggttatcctggaggtccacatcaccatggtggaccacca
cctccccctggaatgcaaggacctccaccagatagaggtccacatccatcacatcatggt
cccatgcacccaggtggaccaagacacccaccaccaggtccaagaggaccacctcctccc
ggaccagacccaagagggcctccccaaagaccagagtgggacaggcctccaggctatggt
ggaccgccacccccaggaggacctggtgggccaccaccaggacatggaccaatgccaggt
cccccacccaacaggggacctcctccgccaggtatgcatggaccaccacatccaggacct
ccgcatccagggccaccacctcatggtggcccccatggaggaccccatggtggccctcat
ggaggaccccatggtggccctcatggaggaccccatggtggtgggcctccgcctggaagt
catccacccccaccaggacatggaggtcctccagctccacatgtgaatcctgcatttttc
ccaccacaaggacctccacaagaaaggccgccacctaatccaccaatggacatgtatggt
caaccaataccaaggtatgagccagaaccctatagatctgagagaaatgccaatccatct
ttaccaaaggatccaacccctgtgacctatccattcgtcatttctaggcatgaaatgcca
cctgcatcccctcaattatcagaaacagagtttgaagagattatgaatcgtaatagaact
gtttccagcagtgctatatccagagctgtgcaagatgcaagtaatgctgagtatgccagt
gctatagaaacactggtcactgccatatctctcatcaaacagtctaaggtatcttctgat
gatcgatgtaaagtactaatcagctctctccaagactgccttcatggtattgaaagcaaa
tcctatggttctgggtcaaggcgcaaagacagaggtacatctcatgacagagaagagagg
ggccatcggtcatctcgtgataagagccgtcacaaggaacgcagagatcgttcacgtagc
aaggatagaggagagtatcgtgaaagaagtcgggaccgagagtacagagaacgtgaccga
gatcgtgatagagatagagaaagggaacgtgaacgttatcgacgataa
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