Saccoglossus kowalevskii (acorn worm): 100372603
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Entry
100372603 CDS
T04123
Symbol
HBS1L
Name
(RefSeq) HBS1-like (S. cerevisiae)
KO
K14416
elongation factor 1 alpha-like protein
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100372603 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100372603 (HBS1L)
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100372603 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
HBS1_N
GTP_EFTU_D2
GTP_EFTU_D3
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
100372603
NCBI-ProteinID:
XP_002731628
LinkDB
All DBs
Position
Un
AA seq
657 aa
AA seq
DB search
MSRHRNIRNRNFDDEYAGYDDIYGHSVEDDSYGISPSTADEFLYHRSHQDHSLSSFMTSH
NSIQEDDEDNSDNENPLSDSKDYQKPKLNSVDEAKLQSCLEEIRNIVGDTIPEHVLIDVI
IQYNFNFERSLDAILNQTESPRGAAPPRAAANFAAPFTKRKTAGTTTHDSVSTKHADKPS
DVSRISSDEDQASQGATRLSFPARSEPMFRIGGDEPSHTRESDKLPDNATSTSVTLTSGT
EGGTTSIPHSSSSTNLPRISSKARLPTIDVMAEYEKRQSNGKDLLNLVVIGHVDAGKSTL
MGHLLYLLGNVNKKTMHKYEQESKKAGKASFAYAWVLDETGEERERGITMDVGLTNFETP
QKLVTLLDAPGHKDFIPNMITGAAQADVATLVVDASRGEFEAGFDAGGQTREHALLVRSL
GVTQLVIAVNKLDNVDWSHARYEEIVSKLGHFLKQAGFKDSEVSYIPCSGLTGENLVLPP
KESKLKSWYNGCTLVQQIDKLKPPKRPLDKPFRLCVSDIFKGMGSGFSVTGKIVSGNVQS
GDKILVMPAAEQGYVKTVFIHDEDTKWACAGDQAVLTVTGIDQMKVNVGSVLCSPVEHIR
STNRVQARVIIFNIEVPITRGYPVVFHYQTLSEPATVKKLVSLLHKSTGEIIKKKPR
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggcacagaaatattcgcaatcgaaatttcgatgacgagtatgcaggatatgac
gatatctacggtcattctgtggaagatgactcctatggtatatccccatcgacagcggat
gagttcttataccatagaagtcatcaagatcacagtctgtcctcattcatgacaagtcat
aactccattcaggaagacgacgaagataacagtgataacgaaaacccactcagtgattcc
aaagattatcagaaacccaaattaaattctgtagatgaagcaaaactacaatcatgtctt
gaggaaatccgtaatattgttggagacactatcccagagcatgtcctgattgatgtcatc
atacagtacaacttcaactttgaaaggtccctggatgccattttgaaccaaactgagtca
cctaggggagctgcaccacctagagcagcagctaattttgctgctcctttcacaaaaaga
aaaacagcaggaacaacaacgcatgacagtgtgtctaccaaacatgctgacaagccgagt
gatgtctcgaggatttcatctgatgaagaccaagccagccaaggagctacgcggttgtct
ttcccggcccgttctgaaccaatgtttcggataggaggggatgaaccttcacatacaagg
gaatcggacaagctgcctgacaatgctacctctactagtgtcacattgacatcaggtaca
gagggaggcactaccagtattccgcactctagcagctcaactaatctaccaagaatatct
tcaaaggcaagactgcctactatagatgttatggcggaatacgagaagcgacagagcaat
ggaaaagatttactcaatcttgtagtgataggccatgttgatgctggcaaatccactctt
atgggtcacttattatatttactgggaaacgtgaataagaaaacaatgcataaatacgaa
caggaatccaagaaagctggcaaagcgtcatttgcatatgcgtgggtcttggatgaaact
ggtgaagaaagagaaagggggattacaatggatgtcggattaactaattttgaaactccg
caaaaactagttacgttattagatgcaccgggtcacaaagattttataccaaatatgatt
acaggagctgcccaggctgatgttgccaccttagttgtggatgcaagccgtggagaattt
gaagcagggtttgatgccggtggacaaacaagagaacatgccttattggttcggtcgctc
ggtgttacgcagttagtgatagctgttaataaactagataatgttgattggtcccatgct
aggtatgaagaaatcgtgtctaaattgggtcactttttaaagcaagcaggttttaaggac
tctgaggtgtcttatattccctgtagtggacttacaggtgaaaatctagtgctgccaccc
aaagaaagtaaactcaaatcatggtacaatggatgtactttagtgcaacagattgataag
ttgaaaccaccaaagagacctcttgacaaacctttcaggttatgtgtttcagacattttt
aaaggaatgggttctggtttcagtgtaactggtaaaatagtttctggtaatgtccaaagt
ggtgataaaatactggttatgccagctgctgagcaaggttacgttaaaactgtatttatt
catgatgaagacacaaaatgggcgtgtgcaggtgatcaggccgttttgactgtcactggt
attgatcagatgaaagtcaatgttggtagtgtactgtgttcacctgttgagcacatcagg
tcaaccaatagagtgcaggctagagttattatcttcaacattgaagtgccaattactagg
ggatatcctgttgtgtttcactatcagactttgagtgagccggctactgtcaaaaaactc
gtcagtttacttcataaaagtactggagagatcatcaaaaagaaacccaggtaa
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