Saccoglossus kowalevskii (acorn worm): 100373254
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Entry
100373254 CDS
T04123
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100373254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100373254
03041 Spliceosome [BR:
sko03041
]
100373254
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100373254
Spliceosome [BR:
sko03041
]
Complex B
Other components
Prp19-related factors
100373254
Complex C
100373254
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
Suf
TPR_2
TPR_8
TPR_12
TPR_15
ARM_TT21_C
PyrI
Motif
Other DBs
NCBI-GeneID:
100373254
NCBI-ProteinID:
XP_002732593
LinkDB
All DBs
Position
Un
AA seq
859 aa
AA seq
DB search
MHRVLEKLRQEPTCILTLVAPNWPTKAWFPLLLEMIVETPIVLPDIPDLLSQPDGTLPTS
PAVYHLHAWRLSVDSRRRKVYLSGLPTSWPGRTEIPPTLPTTQSDEHTPMPRIWLDYCQF
LMDQCKVTRTRRTFDRALRALPITQHHRVWPLYLKFVRTHPLPETAVRVYRRYMKLLPEN
VEEFIEYLKSIERLDGSAVLLYDVVNDEDFVSKEGKSNHLLWHDLCDLICKNPKKVTSLK
VDPIIRSGIKRFTDERGQLWCSLADYHIRSGHFEKARDIYEESIQTVTTVRDFTQVFDAY
AQFEESMIGAKMEMTTEMAPSEEDDIDLELRLERFENLMDRRPLLLNSVLLRQNPHNVHE
WHKRVKLFEGKPKDIIGTYTEAVQTVDPVLATGKLYTIWVEFAKYYEQHDQIAEARVIFE
KGTQVPYVKVDDLACVWCEWTEMEIRHENFDDALKLMQRATAMPGRKVAYHDASEPVQKR
VYKSLKVWSMYADLEESFGTFKSTKTVYDRIIDLRIATPQIIINFGLFLEEHNYFEEAFK
AYERGISLFRWPNVFDIWNTYLTKFIKRYGGTKLERSRDLFEQCLEGCPAKFAKALFLLY
AKLEEDFGLARHAMAVYERATESVLPEEQYEMFNIYIKRAAEIYGVTHTRSIYEKAIEVL
PNDNAREMCLRFADLERKLGEIDRARAIYSHCSQLCDPRVTPSFWQIWKEFEIKHGNEDT
VREMLRIKRSVQATYNTQVNFMSAQMLAASSSSTGTVSDLAPGSSGMDEMKLLEQRAQSI
AVEAQADKIVPKKDILFISGGKTTDEQLEEIAKTANPEEINIDDDDEESDEGPDEVEIEK
KSVPTEIFGSLKNPDEDAP
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgggtactggagaaacttcgacaagagcccacctgcatattaactctggtggcg
cccaattggccgaccaaggcctggtttccgctcctgctggaaatgatagtcgaaacaccg
atagtactgccggacataccggacttgctgtcccagccggacggcacactaccaacaagc
cctgcagtgtaccacttacacgcatggaggctctcagtagactcgcgcagacgaaaggtc
tatctaagcgggctgccaacgtcctggccagggcgaacagagattccaccaacactgcct
acgactcaaagtgacgagcatacaccgatgccgcgtatttggttggactattgtcagttt
ctaatggatcaatgcaaagtgacaagaacaagacgtacgtttgacagagcgctaagagcc
ctgccaatcacccaacaccacagagtgtggccactttatttaaaatttgtgcgtactcat
ccgctgccggaaactgctgttagagtctatagaaggtacatgaagctactgccagagaat
gtagaagagtttatagagtatctcaagtcaattgagagattagacggatcagctgttctt
ttgtatgatgtagttaatgacgaagactttgtctcaaaagaggggaaatctaatcatttg
ctatggcatgatctgtgtgatttgatctgtaaaaacccgaagaaagtaacctcgctcaaa
gtggaccctatcatacgaagcggtatcaagagattcaccgacgaacgtggtcagctttgg
tgttctcttgccgactatcatatcagaagcggacactttgagaaggcacgtgatatctac
gaagaatccattcagaccgttactactgtcagagatttcacacaagtatttgacgcatat
gctcagtttgaagagagtatgataggagcaaaaatggaaatgacaacagaaatggcaccg
agtgaagaagatgacattgatttggaactaaggttagaaaggtttgagaatttgatggat
cggcggccattactactgaacagcgtgctcctccggcaaaatccacataatgtccatgaa
tggcataaaagagtaaaactttttgaaggaaaacccaaagatatcattggaacttacacc
gaggcagtacagacagtggatccagtcttagcaacaggcaaactctacacaatttgggtg
gaatttgctaaatattatgaacagcatgatcaaattgcagaggctcgtgtgatatttgaa
aagggaacccaagtaccctacgtgaaagtagacgatttggcatgcgtctggtgtgaatgg
acagaaatggaaatacgacatgagaactttgatgatgcgttgaagttgatgcaacgagca
accgcaatgcccggcagaaaagtagcctatcatgatgcgagtgagccagtgcagaaaaga
gtgtacaagtcgctgaaagtctggtcaatgtatgctgatttagaagagagttttggtact
ttcaaatctacaaaaacagtatatgatcgtataatcgatctgcgtatagcgacaccacaa
attattataaactttggtttattcttggaagaacacaattactttgaagaggctttcaag
gcatatgagcgtggtatatcattgtttagatggccgaatgtctttgatatatggaatact
tatcttacaaaattcatcaagcgatatggtggaacaaagctggaacgctcaagagatttg
tttgaacagtgtctggaaggatgtccagcaaaatttgcaaaagctctatttctactctat
gccaagttggaagaagatttcggtttagcacgtcatgccatggcagtctatgaaagagcc
accgagtctgttctgcctgaggaacagtatgagatgttcaacatttacataaaaagagcg
gctgagatatacggtgtaacacatacaaggtctatctatgaaaaagctatagaagtactg
cccaacgacaacgcccgtgaaatgtgtctgagatttgccgatttagaacgtaaacttggc
gaaatagaccgtgctagggccatttattctcactgctcacagctgtgtgacccaagggta
acaccaagtttttggcagatatggaaagaatttgaaattaaacatggtaacgaagacaca
gtacgtgagatgttgcgaattaaacgcagcgtgcaagcgacatataacacgcaggtgaat
tttatgtctgctcaaatgttagcagcttcctccagcagtactggtacagtatctgacttg
gctccaggatccagcggaatggatgaaatgaaactattggaacagcgagcacagtcaata
gcagtggaagcacaagccgataaaatagtaccaaagaaagacatacttttcatcagtggt
ggcaaaacaacagatgagcaattagaagagattgctaaaactgctaacccagaggagatc
aatattgatgatgatgatgaagagagtgatgaaggacctgacgaagttgaaatagaaaag
aagtcggttccaacagaaatatttggaagcctgaagaatcccgatgaggatgccccctaa
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