Saccoglossus kowalevskii (acorn worm): 100373287
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Entry
100373287 CDS
T04123
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
KO
K12857
Prp8 binding protein
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100373287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sko03041
]
100373287
Spliceosome [BR:
sko03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100373287
Complex C
U5 SnRNP specific factors
100373287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
eIF2A
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_RIG_1st
Beta-prop_NWD2_C
WD_LRWD1
PEP5_VPS11_N
Cytochrom_D1
WD40_like
Motif
Other DBs
NCBI-GeneID:
100373287
NCBI-ProteinID:
XP_002739808
LinkDB
All DBs
Position
Un
AA seq
350 aa
AA seq
DB search
MPIMEPKRKADDVALVPVKKSRTDIVAVPGSRQQSLVEAGPPRTSSLLAPIMLLTGHEGE
IFSCKFSPDGNTLASAGYDRLIHLWNVYGECENFALFKGHTGAVMELNFSTDGSTLFTAS
TDKTIALWDMQTGGRIKKLRGHTSFVNSCHSTRRGVQLVVSGSDDGTIKLWDTRKKGAIE
TFQNTYQVTAVSFNDTSNQVISGGIDNDLKVWDLRKNDIVYKMRGHSDTITGMELSPDGS
YIVTNAMDNTVRIWDVRPFAPQERCVKLFQGAQHNFEKNLLRCSWSSDGSKIASGSADRF
VYVWDTTTRRILYKLPGHNGSVNEVDFHPQEPVVASCASDKKIYLGEIQP
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcatggaaccgaaaaggaaagcagatgacgtggctctggtcccggtgaaaaag
tcaagaactgatatagttgctgtaccaggatcaaggcaacagtctcttgtcgaagcgggg
ccgccaagaacgtcaagtttgttggcaccgataatgctgttaacaggacatgaaggggaa
atattctcatgtaaattctcaccagatggtaacacattagcatcagctggctatgataga
cttatacatctttggaatgtctatggtgaatgtgaaaattttgctctttttaaaggccac
acaggagctgttatggaattgaatttttcaacagatggaagtacactattcacagcatcg
acagacaaaaccattgcattgtgggatatgcaaactggaggaagaataaagaagttaagg
ggtcacacttcatttgtcaattcctgccattcaacaagaagaggtgttcagttggttgtc
agtggcagtgatgatggcacaatcaagctttgggacaccagaaagaaaggagcaatagaa
acattccagaacacataccaagtaacagctgtttcatttaatgataccagtaatcaagtt
atatcaggtggtattgataatgatctcaaggtttgggatttaagaaaaaacgatatagtt
tacaagatgcgtggacattctgacacaataacaggcatggagttgagtcctgatggttcg
tacattgtaacaaatgccatggacaatacagtgagaatttgggatgtcagaccgtttgca
ccacaagaaagatgtgtgaaactgttccagggtgctcaacacaattttgagaagaattta
ttacgatgtagctggtcttcagatggaagtaagatagcatcaggttcagctgatagattt
gtatatgtatgggataccacaacaagacgaatactttataaacttccaggacataatggt
tcagttaatgaggttgatttccatccacaagaacctgtagttgcttcatgcgccagtgat
aaaaagatctatcttggagaaattcaaccatga
DBGET
integrated database retrieval system
