Saccoglossus kowalevskii (acorn worm): 100375367
Help
Entry
100375367 CDS
T04123
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100375367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sko03041
]
100375367
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100375367
Spliceosome [BR:
sko03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100375367
Complex C
U4/U6.U5 tri-SnRNP related factors
100375367
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_19
AAA_22
PWI
AAA_30
nSTAND3
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100375367
NCBI-ProteinID:
XP_002734191
LinkDB
All DBs
Position
Un
AA seq
1034 aa
AA seq
DB search
MASSREVETWVNDKLHDILGMSDRYIGEYLISLAGKSNSGDEFISRLQDTGTVDMDQPMV
TFAHQLWNKIPHKQQTEKRARIQEREALAFQTKNKQYQLLSDDDDDYAVTKTTKSKKAEK
KRQHIRKKKVSSSESESDHEMEVEKHYADSESDLEDDEKERLRDLKERDEFAERMKQKDK
EKTKNITEKSNKKAYREAQKRLKMETEDRKKIIPDLRKSSRRKYLEKREVDKLEELEADI
ADDEYLFSKSELTEREKKELKYRKTVLTLAKEHKKAGEFEKEHRYYMPKDDMKPSDRYVE
PLEEELGPNSEQKRWEEEHVKKGSLKFGAKDAKRKNKQKQYELVVLDEVEEIDFVNALQM
PGSGKTEDNEQEVSEAEKKKLSIQEVRKSLPIYPFRQDLLDAISEHQILIIEGETGSGKT
TQIPQYLYEGGYTKDGMKIGCTQPRRVAAMSVAARVAEELNVKLGNEVGYSIRFEDCTSD
RTILKYMTDGMLLREFLSEPDLASYSALIVDEAHERTLHTDVLFGLVKDIARFRPDLKLL
ISSATLDTEKFSTFFDDAPIFRIPGRRYPVDIYYTKAPEADYLEACAVSVLQIHITQPIG
DVLVFLTGQEEIETCMEILQERTRKLGSKIRELLVLPIYANLPSDLQAKIFEPTPPGARK
VILATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLVVTPISKASANQRAGRAGRV
AAGKCFRLYTAWAYKNELEESTVPEIQRTNLGNVVLLLKSLGINDLIHFDFMDPPPHETL
VLALEQLYALGALNHLGELTKLGRRMAEFPVDPMMSKMLLASEKYRCSEEILSITAMLSV
NSAIFYRPKDKIVHADNARVNFFRPGGDHLTLLNVYNQWVETDHSTQWCFENFIQHRSMR
RARDVREQLAGLMERVEIEPTTNSHDPVAIRKAITAGFFYHTSRLSKSGQYKTVKHHQTV
MVHPNSCLFEEHPRWLIYHELVFTTKEYMRQVIEIENSWLLEVAPHYYKAKELEDGSGRK
MPKMTGKSKEETRS
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgagcagggaagtggagacgtgggttaacgacaagctacacgatatattgggt
atgagtgatcgatatatcggcgaatatcttataagcttagccggtaaatcgaatagtgga
gatgagtttattagtcgattacaagacactggtactgttgatatggatcaacccatggtg
acattcgctcaccaattatggaataagattccacacaaacaacaaacagagaaaagagca
agaattcaagaaagagaagcgttagcatttcaaacaaagaataaacagtaccagttgtta
tctgatgacgatgatgattatgccgtaactaagacgacaaagtccaagaaagctgagaag
aagagacaacatatccgcaagaaaaaagtctctagtagtgagagtgaaagtgatcacgag
atggaagtcgagaaacactacgctgactctgaatctgatttggaagatgatgagaaagag
agactacgagatttaaaagaaagggacgagtttgctgaaagaatgaaacagaaagataaa
gagaaaacaaagaatattacagaaaaatccaataaaaaggcttacagagaggctcagaaa
cgacttaaaatggaaacagaagacaggaagaaaataataccagatttaagaaaaagttca
cggcggaaatatttagagaaaagagaagttgataaattagaagaactggaagctgatatt
gcagatgatgaatatctattttctaaatcagaattaacagaaagagaaaaaaaagagctg
aagtacaggaagactgtattaacacttgccaaagaacacaaaaaggctggggagtttgag
aaagaacatcgttactatatgccaaaagatgacatgaaaccatctgataggtatgttgaa
ccattggaagaagaattaggaccaaattctgaacaaaaacgatgggaagaagaacatgtg
aaaaaaggatctctgaagtttggggctaaagatgcaaaaaggaaaaataaacaaaaacaa
tatgagttggtggtcctggatgaagttgaagaaattgattttgtaaatgccttgcaaatg
cctgggtctggtaaaacagaggataatgaacaagaagtatctgaggcagaaaagaagaaa
ctaagcatacaggaagtgagaaaaagtttaccaatttatccgtttcgtcaggatttactg
gacgctattagtgaacatcaaatattaattattgaaggtgaaacaggatcgggtaaaacg
actcaaatacctcagtatttatacgaaggtggatatactaaggacggtatgaaaataggg
tgtacgcaaccacgtagggtcgctgcaatgagtgttgccgctagagtcgctgaagaactg
aacgtcaagttgggaaatgaagtaggatatagtataaggtttgaggattgtacatctgat
agaactatattgaaatatatgacagatggaatgttactaagggaattcttaagtgaaccc
gatctggcaagttacagtgcactgattgtggacgaggcacatgaacgtacattacacaca
gatgtgttgtttggattggttaaagatatcgcaagattcagacctgatttaaaactactt
atctcaagtgctacactggatacagagaagttttctacgttttttgatgatgcaccaata
tttcgaattcccggtcgtcggtatccggttgatatttattacactaaggcacctgaagct
gactacctagaagcctgtgctgtgtcagttttacaaatccatataacacagcctattgga
gatgtattagtgtttttaactggacaggaagaaatagaaacatgtatggaaatattacag
gaaaggacaagaaaacttggttccaagatacgtgagttactagtgctgccaatttatgca
aatctaccatctgatttacaagccaagatatttgaaccaactccacctggagcacgcaaa
gtgatattagcaaccaacattgcggagacttcattgacaattgatggaattatttatgtt
attgatcctggattctgtaaacagaaaagttataatgccaggactggcatggaatcattg
gttgttacgccaatatcaaaggcatctgccaatcagagagctggtagagcaggtcgagtg
gctgctggtaaatgttttcgtctttatactgcatgggcatataagaatgaattagaagag
tctacagtacctgagattcaacgtaccaaccttggtaatgttgtattattgctaaaaagc
cttggtataaatgatttaattcactttgatttcatggatcccccaccacatgagacatta
gtattggcgttagaacaactctatgctttgggtgcattaaaccatttaggagagttaacc
aaactaggaagacggatggcagaatttccagtggatcctatgatgtcaaaaatgttacta
gcttcagaaaaataccgttgttctgaagaaatcctctcaatcactgccatgttatcagtc
aatagtgctatattctacagaccaaaggataaaatagttcatgctgataatgccagagtc
aatttcttccgaccaggtggagaccatctcacattattgaatgtctacaatcagtgggtg
gaaacagatcattccacacaatggtgctttgagaattttattcaacatcgatctatgaga
cgagcacgtgatgttcgagaacaattagcgggattgatggaaagagtggaaattgaaccc
acgacaaattctcatgatcctgtagcaattagaaaggccatcacagctggcttcttctat
cacacatcaagacttagtaaaagtggtcagtacaagacagtaaaacatcaccaaactgta
atggtccatcctaatagttgtttatttgaagagcatccaagatggctgatatatcatgaa
ttagtgtttacaacaaaggaatacatgagacaggttattgaaattgagaacagttggtta
ctggaagtagctcctcattattacaaagcaaaggaattagaagatggtagcggaaggaag
atgccaaaaatgacaggaaaaagtaaagaggaaacaagatcttaa
DBGET
integrated database retrieval system
