Saccoglossus kowalevskii (acorn worm): 100375471
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Entry
100375471 CDS
T04123
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100375471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sko03041
]
100375471
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100375471
Spliceosome [BR:
sko03041
]
Complex C
Other components
Step II factors
100375471
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
PRP38_assoc
GIPC1_GH2
AAA_19
nSTAND3
AAA_30
TsaE
T2SSE
Sigma54_activ_2
PhoH
UvrD-helicase
Peptidase_S41
AAA_16
OB_RRP5_4th
ABC_tran
Motif
Other DBs
NCBI-GeneID:
100375471
NCBI-ProteinID:
XP_002734274
LinkDB
All DBs
Position
Un
AA seq
1199 aa
AA seq
DB search
MADIDELDKLEYLSLVSKVCTELDNHLGLNDKDLAEFIINLAEKNNAFDTFKSALVENGA
EFPDSFISNLLRLIQRMKPAKKDIKVEEEIVDDSRKKRKAEAFPGLCLPDNIEVKPTSDD
KKIADDAIDELEALMPKLEPEVTHVKDKKKKHRSRSKSVEKEKHRDKKRHRHRDRDRDRD
KRRDRSRSRSRDRYRDRDRRRTRSRSKDRDSYKNSRDKESGSGKKKYKDNFVDRAPPADP
EIGHVYDGKIASIMKFGCFVQLEGLRKRCDGLVHISQLRREGRVSDVNEVVHKGQKVKVK
VLSIVGARVSLSMKDVDQDTGEDLNPTSARNLPSSHDNPEETIRNPDRPSNIPLVNVKME
EDDSSNVKKVQRMTSPERWEIKQMLAANCIDKTELPDFDEDTGLLPREEDNSDEEVEIEM
VEEEPPFLKGHGRQSLDLSPVRIVKNPDGTLSKAAMMASALSKERRELKQAQERSEADSI
PTGMNTTWIDPMPETDRVIGAQTRGIGLVQPDMPKWKRHAFGGNKASFGKRTKLTIVEQR
ESLPIYRLKEQLAQAIQDNQILIVIGETGSGKTTQITQYIAEAGYTIRGKIGCTQPRRVA
AMSVAKRVAEEFGCRLGQEVGYTIRFEDCTSPETKIKYMTDGMLLRECLIDPDLNQYSVI
MLDEAHERTIHTDVLFGLMKKAIRKRTELKLIVTSATLDAVKFSQYFFESPIFTIPGRTY
PVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMESLGP
DVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQ
KVYNSKTGMDQLVVTPISQAQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLTTAVPEIQR
TNLASTILSLKAMGINDLLSFDFMDPPPTETLIAAMEQLHSLSALDDEGLLTRLGRRMAE
FPLEPMLSKTLIMSVHLGCSDEILTVVSMLSVQNVFYRPKDKQSLADQRKAKFHQLEGDH
LTLLAVYNSWKNNKFSNPWCFENFVQARTLRRAQDVRKQLMGIMDRHKLDVFSCGKNTAK
VQKAICSGFFRNSAKKDPQEGYRTLVDGQVVYIHPSSALFNRQPEWVVYHELVLTTKEYM
REVTQTDPKWMVEFAPAFFKFADPTRLSKQKKQQRLEPLYNKYEEANAWRISRQRYRRN
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggccgacatcgacgagttggataagttggagtatttgtcgttggtttctaaagtgtgt
actgaattagacaaccatctagggctcaatgacaaggacttggctgagttcatcataaat
ctagccgagaaaaacaatgcatttgacacattcaagtctgccttagtagagaatggagca
gagtttccagactcgttcatttcaaatctgcttcgactgatacaacgtatgaaacctgca
aagaaagatatcaaagttgaagaagaaatagtggatgacagccggaagaagaggaaggca
gaagcattccctgggttgtgtttgccagataacattgaagtgaagcctacttcagatgat
aaaaaaattgctgacgatgccatagatgaactagaagcacttatgccaaaattagaacca
gaagtcactcatgttaaagacaaaaaaaagaaacatcgaagtagaagcaaaagtgtagaa
aaagaaaagcacagagacaaaaagagacatagacacagagatcgtgacagggaccgagat
aaaaggagagacaggtcacggtccagaagtcgagatagatacagagatagagatcggcgt
agaacccgcagtagaagtaaggacagagacagttataaaaacagtagggacaaggaaagt
ggtagcggaaagaaaaaatataaagataactttgttgacagagccccaccagctgatcct
gaaataggacatgtgtatgacggcaagattgctagtattatgaaatttggttgttttgtc
caattggaaggactgagaaaacgttgtgatggtctcgtccatatttcacagttaagacgt
gaaggcagagtgtctgatgtcaatgaagtggtacacaaaggtcaaaaagtcaaggtcaag
gtattatccatagttggcgcgagagtaagcctatcaatgaaagatgttgaccaggacact
ggagaagatctgaatcctacaagtgcccgtaacttgccgtcttcacatgataatcctgag
gaaacaattcgtaatccagataggccgagtaatatacctttagttaatgttaaaatggaa
gaagatgacagttcaaatgtgaagaaagtccaacgaatgacatccccagaaaggtgggaa
attaaacagatgttggcagccaactgcatagataaaactgaattacccgactttgatgag
gatactggtttactacccagggaggaagataactcagatgaggaagtggaaattgagatg
gtggaggaagaaccacctttcctcaaaggtcatggacgtcagagtttagacttgagtcct
gtcaggatagtcaagaatcctgacggtacattgtccaaggcagccatgatggctagcgca
ttgtcgaaagaaagaagagagctgaagcaagcacaggagagatctgaagctgattctatt
ccaactggtatgaacacaacatggattgatcctatgccagaaactgatcgtgtcatagga
gcacagacacgaggcatcgggttagtacagcctgacatgccaaaatggaaacgccatgct
tttggtggtaataaagcttcatttggaaagaggacaaaactaactattgttgaacagaga
gaaagtttgccaatatacagactgaaggagcagcttgcacaagctatccaagacaaccag
attcttatcgtgattggcgagactggcagtggcaagacgacccagataactcaatacatt
gcagaagctggttacacgatacgtggcaaaataggatgcacacaaccaagaagagttgcc
gctatgtcggtggctaagagagtagccgaggagttcggttgtagattgggacaagaggtt
ggatacacaatccgttttgaagattgtacgagtccagaaactaaaatcaaatatatgaca
gatggtatgttactcagggagtgccttatcgaccctgatttgaaccagtactctgtgatc
atgttagatgaggctcacgaacgcacgatccacaccgatgtcttgtttggtttgatgaag
aaagctataaggaagagaacagagttgaaattaattgttacctcggcaacactggacgca
gtaaagttttcccaatatttctttgaatcacccattttcacgattcctggacgtacatat
cctgttgagattctttacactaaggagccagagacagattacttagatgcatcgctaata
actgtgatgcaaattcatctcacagaacccccaggtgatattctggtcttcttaactggt
caagaagagatagacaccgcttgcgaaatcctctatgaaaggatggaatccctcggaccg
gatgtaccagagctgatcatcttacctgtatattcagcattgcccagtgagatgcaaaca
agaatatttgacccagcacctccaggtagtcgaaaggttgtgattgctaccaatattgct
gagacatctctgactattgatggtatatactatgtggtagatccagggtttgtcaagcag
aaggtgtacaattcaaaaaccggtatggatcagctggttgttacaccaatatcacaggct
caagcaaaacagagatccggtcgtgctggtagaactggtccaggaaagtgctataggtta
tacacagaaagagcttaccgagatgagatgttgacaacagctgtacctgaaatccaacgt
accaacttggctagtactatactctcccttaaagctatgggtatcaatgatttgctgtca
tttgatttcatggacccgcccccaacagagacgttgatcgcagcgatggagcagttacat
tcactcagtgcattagatgatgaaggcttactcacaaggttgggcaggaggatggcagag
tttcccctggaacccatgttatcaaaaacattgatcatgtcggttcatcttggctgcagt
gatgaaatactgactgtggtgtcaatgttatctgtacaaaatgtgttctacagaccaaag
gataagcagtcactggctgatcaaaggaaagccaagtttcaccagttagaaggagatcat
ttaacactacttgcagtctacaattcgtggaagaacaataaattctctaatccgtggtgt
tttgaaaattttgtacaagcaaggactttgcggagagcccaggatgtgaggaaacagttg
atgggcatcatggacagacacaaactagatgttttctcatgtggtaagaacactgccaaa
gttcagaaagcaatatgtagcgggttcttccgtaattcagctaagaaagacccacaggaa
ggttaccgtacattggtagatggacaagttgtgtatattcatccatcaagtgcactgttc
aatagacaacctgaatgggttgtctatcatgagcttgtcttaaccaccaaagaatacatg
cgtgaagttacacagacagaccctaaatggatggtggaatttgcaccagcattcttcaaa
tttgctgatccaacaagactcagcaaacagaagaaacaacagaggctggaaccactttac
aataaatatgaagaagcaaacgcatggcgtatatcaagacagagatacaggcgaaattaa
DBGET
integrated database retrieval system
