Saccoglossus kowalevskii (acorn worm): 100375879
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Entry
100375879 CDS
T04123
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100375879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100375879
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100375879
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_EML_2
WD40_Prp19
Beta-prop_WDR3_1st
WDR55
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_Aladin
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR11_2nd
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
100375879
NCBI-ProteinID:
XP_006819762
UniProt:
A0ABM0MIC1
LinkDB
All DBs
Position
Un
AA seq
978 aa
AA seq
DB search
MDGGIATQPPPQRFFHMPRLPQHHRVHFYRHASTPPGISLSFDGKRMRKAVQRRTIDYNA
TCIKYLENRTWQRDYRDIRAIQPDNSYGTDMMLPCAMVHNPINAVTTKFVRTSTNKVRCP
IFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHEYPVRTMTWSHNDMWMLTGDH
AGYVKYWQSNMNNVKMFQAHKEPIREARWDSVMITTQLMSQSYDVLCISRTHYYYIQYLL
LVISVANYFIQSFANVGLDNSLERVKTNHGSLDNWRSQFDISPHQKSSISFTNSFCPTDN
KFATCSDDGTVRIWDFIRCQEERICRAIAWHPIHENLFCSGGSDGAILFWQVGIDKEVGG
MEQAHDGMVWSLAWHPLGHILCSGSNDHTTKFWTRNRPGDKMRDKYNLNLLPAGSSIEAL
EYDDESVNTPLIPGMGLEHGLPDHLTKPRNDMSADESSIPGLGIERSDDYRVHTVQKKVP
YAKPIPAQFKRQWEQQKEAPLLEREKEVEKELLMAGQMHPGNAPIIPSFEQGKQMAMQML
LNQGGIPPQGQMQGPPPLMSTPTQPPMLRGQNMGGSHYPGQSSMQHNMQQQGMGQMDVDE
PPPPPPPLQGDDRIGQGHFPQDQDMRQMQHDDPRHRRNPQQQRYQQDNYRGETDFASRDV
DMRQEAGFDGMPPPAPPQDEDLRNRRFDHQEQWGAPPRDFDERRHFGNMRPEFPKDFDER
QEFQGHDPRGFRGGRNRGRGGRGRGGSMEGHDRSMEGHGPPVDDRSGLLPTPDELSGRGY
NPRGRGGHAPSRDQEDQSRHGRGGGHSTSSRDQDDRHPTPEFFSDYDERSHGPPSNQSHD
NKPPSLLDLPTLPPPPQNPKRSWGEVSGDENAGGTDPRSRNREAGSPRGKLGRFNDDDDQ
FTNPGARSFVPGSRENNDRGELRQRGRSDRGRGGSDRGRGSDRGGRGRGRGRGGRGQRGG
GPPSRGPGRGGRGGRGGR
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggatggtggaatagccacacaacctccacctcagcgtttttttcatatgcctcggctg
ccacagcaccacagagtgcatttctacaggcatgctagcacacctcccggaatatcgcta
tcgtttgatggcaagcgaatgagaaaggctgtacaaagaagaacgatagattacaatgca
acatgtataaagtatttggagaatcgtacatggcagcgtgattatcgtgatataagagcc
attcagccagataactcatatggaactgatatgatgcttccgtgtgctatggtgcataat
cccatcaatgctgtcactacaaaatttgtcagaacgtcaaccaataaagttagatgccct
atatttgttgtgaggtggacaccagagggtagaagattggttactggcgcttccagtggt
gaattcaccctgtggaatgggttaacattcaactttgaaactattttacaggctcacgaa
tatccggtacgtacgatgacctggagccacaacgacatgtggatgttgacgggtgaccac
gctggctatgtcaaatactggcaatcaaacatgaacaatgtcaagatgtttcaagctcac
aaggaaccaattcgtgaggcaaggtgggattccgtcatgatcacaactcaactaatgagt
cagtcatatgacgtgctttgtatcagtaggacacactactactacattcaatatttatta
ttagtaatatctgtggccaattatttcatacaaagttttgccaatgtgggtcttgacaat
agcttggaacgagtgaagaccaatcatggaagccttgataactggagaagtcagtttgac
atatctccgcatcagaaatcctctatttcttttaccaacagtttctgtccaactgacaac
aaatttgctacgtgttctgacgatggtaccgtccgtatatgggacttcatacgatgtcag
gaagagagaatctgcagagctattgcttggcatcctattcatgaaaatttattttgtagt
ggtggttctgatggtgcaatacttttctggcaagttggaattgataaagaggtaggtggg
atggaacaagctcatgatggaatggtgtggagtctagcgtggcatcccctgggacatatc
ctgtgttctgggtctaatgaccataccacaaaattttggacgagaaatcgtccaggcgat
aagatgagggataaatataatttgaatttactgccagcggggagctccatagaagcgttg
gaatatgacgatgaatcagtgaatactcctttgattcctggtatgggtttagaacatgga
cttccagatcatctcactaaaccaagaaatgacatgtcagcagatgaaagttccatacca
ggactgggtattgaaagatcagatgattacagagtgcatacagtgcagaagaaagtacct
tacgctaaaccaattcctgcccagttcaaaagacagtgggagcaacagaaagaggcacca
ttgcttgaaagggagaaggaagttgaaaaagagctacttatggcaggacagatgcatcct
ggtaatgctccgatcataccctcgtttgaacaaggtaaacagatggccatgcagatgctc
cttaatcaaggtggtataccgccacaaggacagatgcaaggacctccaccactcatgtca
acgcctactcagcctcctatgctcagagggcaaaatatgggggggtcccattaccctggg
caatcctcaatgcagcataatatgcaacagcaaggcatgggacaaatggacgttgatgaa
ccacctcccccaccaccacctttgcaaggggatgaccgaattggtcaagggcacttcccg
caagaccaggacatgaggcaaatgcaacatgatgatccacgccacagacgaaacccgcag
cagcagaggtaccaacaggataattaccgtggtgaaactgattttgcttccagagatgtt
gatatgagacaagaagcaggatttgatggcatgccaccgcctgcaccacctcaagatgag
gacttgcgtaacagaaggtttgaccatcaagagcaatggggagcacctcctagagacttt
gatgaacgtcgacattttggtaatatgaggcctgaatttccgaaggactttgatgaaagg
caggaatttcaaggtcatgaccctagaggttttcggggaggtaggaatagaggtcgtgga
ggacgaggacgtgggggatcaatggaaggacatgatagatcaatggaagggcatggtcca
ccagtagacgataggagtgggttgttgcccactccggatgaacttagtgggaggggatat
aaccctcgtggaagaggtggacatgctccttcaagagaccaggaagatcaaagcagacac
ggaagaggaggcggccattcaacgtcatcgagagaccaagatgatagacatcccacacca
gaatttttttcggactatgatgaacgttcacatggcccaccaagcaaccagtcacatgat
aacaaacctccgtcgttacttgatttacctaccttgccacctcctccacaaaacccaaag
cgctcatggggagaagtgtccggtgatgaaaacgccggtggtaccgatcctcggtcaaga
aatcgagaagcagggtcacctagaggtaaacttgggagatttaacgatgatgatgatcag
tttactaacccaggggccagatcctttgtgccaggcagcagagagaataacgacagaggg
gagctacggcagagagggagaagtgatcgtggaagaggtggaagtgatcgagggagagga
agtgatcgaggaggcagaggaaggggtagaggtagaggtggaagaggacagagaggtgga
ggaccacccagtagaggtcctggtagaggaggtagagggggaagaggtgggagataa
DBGET
integrated database retrieval system
