Saccoglossus kowalevskii (acorn worm): 100376228
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Entry
100376228 CDS
T04123
Symbol
BAT1
Name
(RefSeq) HLA-B associated transcript 1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03013
Nucleocytoplasmic transport
sko03015
mRNA surveillance pathway
sko03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100376228 (BAT1)
09122 Translation
03013 Nucleocytoplasmic transport
100376228 (BAT1)
03015 mRNA surveillance pathway
100376228 (BAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100376228 (BAT1)
03041 Spliceosome [BR:
sko03041
]
100376228 (BAT1)
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100376228 (BAT1)
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100376228 (BAT1)
Spliceosome [BR:
sko03041
]
Complex C
Other components
EJC/TREX
100376228 (BAT1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100376228 (BAT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-GeneID:
100376228
NCBI-ProteinID:
XP_002738626
LinkDB
All DBs
Position
Un
AA seq
429 aa
AA seq
DB search
MTEENNIQEEELLDYDEEEQQETTQETGGDGDKKKDVKGNYVSIHSSGFRDFLLKPELLR
AIVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLV
LCHTRELAFQIAKEYERFSKYMPTIKVGVFFGGINIKKDEQTLKNNCPHIVVGTPGRLLA
LGRNKTLSLKHVKHFILDECDKMLEQLDMRRDVQDIFRQTPHEKQVMMFSATLSKDIRPI
CKKFMQDPMEVYVDDETKLTLHGLQQYYCKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ
RCIALSQLLVEQNFPAIAIHRAMNQEERLARYQQFKDFQKRILVATNLFGRGMDIERVNI
VFNYDMPEDSNTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNIGELPDEI
DITSYIEQR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagaaaacaacattcaagaggaagagttgttggattatgatgaggaagaacaa
caagaaactactcaagagacagggggtgatggggacaagaagaaagatgtgaaaggaaac
tacgtttccattcacagttcaggatttcgtgatttccttctcaaaccagagttgttgcgt
gctattgttgattgtggttttgaacatccgtcagaagttcaacacgagtgtattcctcaa
gccatcttgagtatggacgtgttatgccaggctaagagtggtatgggaaaaactgcagtt
tttgtactggctactctgcaacaaatagaacccgttgatggacaggtttctgtccttgta
ctctgtcatactcgtgagttggcatttcaaattgccaaggagtatgagaggttctcaaag
tacatgccaacaatcaaggttggagtgttctttggtggtatcaacatcaagaaagatgaa
cagacgttgaaaaacaactgtcctcacattgtggtaggaaccccgggacgtttgctggct
ttgggaagaaacaagacactgagtctgaaacatgtcaagcatttcattctagatgaatgt
gataagatgctagaacagcttgatatgcgtcgggatgtacaagacatatttcgtcagaca
cctcacgagaagcaagtcatgatgttcagcgctacactcagcaaagatatccgacctatc
tgcaagaaattcatgcaagatccaatggaagtgtatgttgatgacgagaccaaacttaca
ttgcatggtctgcaacaatactactgtaagcttaaagacaatgagaagaacagaaagttg
tttgatttgctggatgttttggaattcaatcaggtggtgatatttgtgaagtctgttcag
cgttgtatagctttatcacaactattggtagaacagaatttcccagccattgccattcat
cgtgctatgaatcaagaagaaagattggccagataccaacagttcaaggacttccagaaa
agaattcttgtggcaactaacttatttggccgtggtatggatattgaaagagttaatata
gtatttaattatgatatgccagaagattccaacacatatctacatagggttgcccgtgct
ggtcgatttggtactaagggcttggcaataacgtttgtatcagatgaaaatgatgccaaa
atattaaatgaagtgcaagatagatttgaagttaatatcggagaactgccagatgagatt
gacatcacatcatacattgaacagcgttga
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integrated database retrieval system
