Saccoglossus kowalevskii (acorn worm): 100376354
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Entry
100376354 CDS
T04123
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03022
Basal transcription factors
sko03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100376354
09124 Replication and repair
03420 Nucleotide excision repair
100376354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sko03021
]
100376354
03036 Chromosome and associated proteins [BR:
sko03036
]
100376354
03400 DNA repair and recombination proteins [BR:
sko03400
]
100376354
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100376354
Transcription machinery [BR:
sko03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100376354
Chromosome and associated proteins [BR:
sko03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
100376354
DNA repair and recombination proteins [BR:
sko03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100376354
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
Helicase_C_2
DEAD_2
ResIII
SesA
nSTAND3
Motif
Other DBs
NCBI-GeneID:
100376354
NCBI-ProteinID:
XP_006813186
LinkDB
All DBs
Position
Un
AA seq
736 aa
AA seq
DB search
MQELKRSLDAKGHCVLEMPSGTGKTVSLLSLIISYQKAHPLDTSKLIYCSRTVPEIEKVI
LLLTFLKPLXQNSYYNDFIXTNIKKVTKYQIMFIILQVNSIPIFIIIYVKLHMLLLCLRQ
VWLSLCSWYLLYTLXEFDSHGREVPIPSGIYSIDDMKDYGREHKWCPYYLARYSLLHANV
IVYSYHYLLDPKIADIVSKEFSKKCVIIFDEAHNIDNVCIDSLSVNITRRIIDRCQTNLD
SLKTEINKIKEKDANRLREEYNRLVEGLREANVARETDVQLANPVLPDEILQEAVPGNIR
NAEHFVGFMKRFSEYIKMRLRVQHVVSESPPSFLKDIYSKVCIERKPLRFCAERLHSLLR
TLELAELHDYSAVTLVANFATLVSTYARGFSLIIEPFDDRTPTIPNPILHFTCMDASIAI
KPVFDRFQTVXITSGTLSPLDMYPKILDFRPVTMXSFTMTLARNCICPMIIGRGNDQVAM
TSKFDSRQDIAVIRNYGNLLVEMSYIVPDGIVCFFTSYVYMESIVASWYEQGIIDNIQKN
KLLFIETQDAAETSVALHHYQKACENGRGAVLLSVARGKVSEGIDFDHHLGRAVIMFGIP
YVYTQSRILKARLEYLRDQYQIRENDFLTFDAMRHAAQCVGRVMRGKTDYGIMVFADKRF
SRADKRGKLPRWIQEYLKDTVSNLSTDEAIQIAKKFLRIMAQPFRREDQLGLSLLTLDQL
QSEEMQKKIEKTSHQQ
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaacttaaaagatctttagatgcaaaaggtcactgtgtccttgagatgccatca
ggtacaggaaagactgtatcattgctatcactcattatttcttaccaaaaagcccatcca
ttggacacatcaaaattaatttactgttcaagaacagtaccagagattgaaaaggtaatt
ctcttattgacgtttttaaaaccactttaacaaaattcatattacaatgattttatttag
acaaacataaaaaaagttactaaatatcaaattatgtttataatcctgcaagttaacagc
atcccaatatttatcataatatatgttaaactgcatatgcttttgttatgtttaagacaa
gtgtggctgtcattgtgttcttggtatttattgtatacattataggagtttgacagtcat
ggtagagaggtaccaataccatctggaatttacagcattgatgatatgaaagactatggt
agagaacataagtggtgtccatactatctggccagatattctttattacatgccaacgtg
attgtctacagttatcattatttacttgatccaaagattgctgacattgtatcaaaagaa
ttttcgaaaaaatgtgtaataatttttgatgaagcgcacaacatagataatgtgtgcatc
gattcactcagtgttaatattacaagaagaattatagacagatgtcaaactaatttagat
tctttgaaaacagagataaataaaattaaagagaaggatgctaatcgcctacgagaagag
tacaacagacttgttgaaggtctgagggaagctaatgttgccagggaaactgatgtgcaa
ttagctaatcctgtattacctgatgaaatattacaagaagcagtaccaggaaatattcga
aacgcagaacactttgttggatttatgaaacgtttcagtgaatacataaaaatgcgattg
agggtgcaacatgttgtatcagaaagtccgccatctttcctcaaggatatctatagcaaa
gtttgcatcgaaaggaagcccctcaggttttgtgctgagaggttacattcgctactgagg
accctagaattagcagaattacatgattattcagccgtgacattagttgctaattttgca
acacttgtgagtacatatgcaagaggtttcagtttaatcattgagccgtttgatgacagg
accccaaccattccaaatccaatacttcatttcacatgtatggatgcttccatagctatt
aaaccagtgtttgacagatttcaaactgtangtatcacatcaggaacactgtcaccattg
gatatgtatcccaagatattggattttcgacctgtaaccatgntctcatttacaatgaca
ttggccaggaattgcatatgtcctatgattattgggagaggcaatgaccaggttgcgatg
acttcaaaatttgacagccggcaagacattgctgttattcgtaactatggtaacctatta
gtggaaatgtcttacatagtgccagatggaattgtatgtttcttcacaagttatgtttat
atggaatccattgtagcttcatggtatgagcaaggaattattgataatatccagaaaaat
aaactattatttattgaaactcaagatgcagctgagaccagtgttgcattacatcattat
caaaaggcttgtgagaatggtagaggtgctgtgttactctctgttgctaggggaaaagtg
tcagaaggaattgattttgaccaccaccttgggagagctgtgatcatgtttggtattcca
tatgtatacacacaaagcaggattctcaaggcacgtttggagtatttacgagatcagtat
cagataagagagaatgatttcctgacttttgatgccatgaggcatgcagcacagtgtgtt
ggtagagtcatgcgagggaaaacagattatggtattatggtatttgctgataaaaggttt
tccagagctgataaacgtggcaaactaccgagatggattcaagaatacctgaaggacact
gtgtcaaacctttcaactgatgaagctatacagattgcaaagaagtttttacggataatg
gcccaaccattcagacgagaagatcaacttggtttatctttgctgaccttagatcaatta
cagtcggaagagatgcagaaaaagatagaaaagacgtcccatcagcaatga
DBGET
integrated database retrieval system
