KEGG   Saccoglossus kowalevskii (acorn worm): 100376966
Entry
100376966         CDS       T04123                                 
Symbol
PRPF19
Name
(RefSeq) PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
sko  Saccoglossus kowalevskii (acorn worm)
Pathway
sko03040  Spliceosome
sko04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sko00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100376966 (PRPF19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    100376966 (PRPF19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sko03041]
    100376966 (PRPF19)
   04121 Ubiquitin system [BR:sko04121]
    100376966 (PRPF19)
   03400 DNA repair and recombination proteins [BR:sko03400]
    100376966 (PRPF19)
Enzymes [BR:sko01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     100376966 (PRPF19)
Spliceosome [BR:sko03041]
 Complex B
  Other components
   Prp19 complex
    100376966 (PRPF19)
 Complex C
   Prp19-CDC5 complex
    100376966 (PRPF19)
Ubiquitin system [BR:sko04121]
 Ubiquitin ligases (E3)
  U-box type E3
   100376966 (PRPF19)
DNA repair and recombination proteins [BR:sko03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    100376966 (PRPF19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Beta-prop_EML_2 Prp19 Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta Beta-prop_WDR3_2nd WD40_CDC20-Fz EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_Aladin WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_Vps41 Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_HPS5 WDR90_beta-prop_4th U-box Beta-prop_RIG_2nd Beta-prop_WDR35_TULP_N Beta-prop_IFT122_1st zf-Nse Beta-prop_Nup120_160 Beta-prop_DCAF4 Beta-prop_ACSF4 Beta-prop_VPS8 PAS_11
Other DBs
NCBI-GeneID: 100376966
NCBI-ProteinID: XP_002734121
UniProt: A0ABM0GNX0
LinkDB
Position
Un
AA seq 511 aa
MALVCSISHEVPEHPVLSPTSGHIFEKRLIEKYISDNGTDPINGEDLSEDQLIDIKVSPV
VKPRPPTATSIPAILKALQDEWDACMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVMAAREALATLKPQAATGIIPTTPTQPSLPPAVMVAGMEPMEAAEAGEEAGMTDEVI
QKLQDKAQLLTAERKKRGKRVPEGLVGSEDIRNYKQQSTHPGLHSASVPGILSMDLHASD
TSKVLTGGADKTAVVFNKDTEHVVTILKGHTKKVTNVIYHPEEDIVFTSSPDTTIRVWMV
ANGSCTQVIRAHEGPVTGISLHATGDYLLSCSEDRHWAFSDIRTGRVLTRISDESVSHPL
TCAQFHPDGLIFGTGTGDSMIKIWDLKERANVANFPGHSGPISAISFSENGYYLATSADD
SVVKLWDLRKLKNFKTISLDDRYEVKSLCFDQSGTYLAVAGTDVRVYLCKQWDNLAVFKD
HSDMATGVRFGRHASFIASTGMDRSLKFYGL
NT seq 1536 nt   +upstreamnt  +downstreamnt
atggcgcttgtctgctcaattagtcacgaagtgccggaacatcccgtgttgtcaccaacc
tctggtcacatatttgaaaaaagactaatagagaaatatatcagtgataatggtactgat
cccatcaatggtgaagacctctcagaagaccagttgattgacatcaaggtgagtcccgta
gtgaagccacgcccacccacggctacaagtataccagctatattgaaagctttacaggat
gaatgggatgcatgtatgttgcatagttttacacttagacaacaactacagacggcaaga
caagaattatctcatgccttgtatcagcatgatgctgcctgtcgtgtcatcgctcgtctc
actaaagaagtgatggctgcaagagaagccttggctacattgaaaccccaggctgctact
ggtattataccaaccacacccacacagccttcattaccacctgccgtcatggtggccggt
atggagcccatggaagctgctgaagctggtgaggaagccggaatgactgatgaagttatc
cagaagttacaagacaaggcacagttgttgactgccgagcgtaagaagcgtggaaaaaga
gtacccgagggattggttggaagtgaagatattagaaactataaacaacagtctacacat
cctggtttgcatagtgctagcgtacccggcatcttgtcaatggacttgcatgcttcagac
acatcaaaggttctcacaggtggcgctgataagactgctgttgtatttaacaaagacact
gaacatgttgtaacgattttgaaaggacatacaaagaaagttaccaatgtcatctaccat
ccagaggaagacattgtattcacatcatcaccggacaccactattcgtgtatggatggta
gcaaatgggtcatgtacacaagttattcgtgctcatgaaggtccagtcactggtatcagt
ttacatgcaacgggtgattatctactcagctgttccgaagataggcactgggcgttctct
gatattagaactggccgtgttctcactagaatttcagatgaatctgtcagtcatccgctg
acatgtgctcagttccatcccgatggtctcatctttggtactggtactggtgacagcatg
attaagatatgggatttgaaagagcgggctaatgtggccaacttcccaggacattccgga
ccgatctcggctatctccttttctgagaatggttattatcttgctacatcggcagacgac
tctgtcgtcaaattgtgggatctacgaaaactgaagaatttcaagacaatctcattggat
gatcgatatgaggtgaaatctctgtgttttgatcagagtggtacatacttggctgtagct
ggtaccgatgtacgtgtatatctctgtaaacaatgggataacctggcagtattcaaagat
cactcggatatggctacgggagtgcgatttggtcggcatgcgtcattcatcgcatctaca
ggtatggaccgaagtctcaaattctatggcctgtag

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