Saccoglossus kowalevskii (acorn worm): 100377155
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Entry
100377155 CDS
T04123
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100377155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100377155
03036 Chromosome and associated proteins [BR:
sko03036
]
100377155
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100377155
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100377155
mRNA degradation factors
5'-3' decay
Decapping complex
100377155
Chromosome and associated proteins [BR:
sko03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100377155
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA
Motif
Other DBs
NCBI-GeneID:
100377155
NCBI-ProteinID:
XP_002730663
LinkDB
All DBs
Position
Un
AA seq
454 aa
AA seq
DB search
MASAKTDGPVANHTAGPAGRPGMAPHTMQNKGPLKDAEDWKKGLVRPPTDRRVKTSDVTN
TKGNEFEDYCLNRELLMGIFEMGWEKPSPIQEESIPVTLSGRDILARAKNGTGKTGSYLI
PILERIDSSKDYIQAMVLVPTRELALQTSHTCKQLSKHLGARVMVTTGGTNLKDDIMRLY
ENVHIVIATPGRILDLMDKGVAKMSKCAFLCLDEADKLLSQDFKNMLDRCINFLPNDRQI
MLFSATFPLSVQEFMTRHLNKPYEINLMDELTLKGITQYYAFVQEKQKVHCLNTLFSKLQ
INQSIIFCNSTQRVELLARKITELGYSCFYIHAKMRQEHRNRIFHDFRNGACRNLVCSDL
FTRGIDIQAVNVVINFDFPKHAETYLHRIGRSGRYGHLGIALNLITYEDRFSLYQIEREL
GTEIKPIPGSIDKSLYVAEYHSLPDEADGQNEEK
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgccaagacggatggccctgtggccaaccacactgcaggtccagctgggcgg
cctgggatggcacctcacaccatgcaaaataaaggtcctttaaaagatgcagaagattgg
aaaaaaggattggtgagacctcccaccgaccggagggtgaaaacctcggatgttacaaat
acaaaaggcaatgaatttgaagactattgcttaaatcgcgagcttctgatgggtatattt
gaaatgggctgggaaaagccttcacccatccaagaagaaagcattcctgttaccctatcc
ggtcgcgacatattagccagagctaagaacggcacagggaaaactggttcatatcttata
ccaatacttgaaagaatagattcttcaaaggattacatacaagctatggtacttgtcccg
acaagggagttggcattgcagacgagccacacatgtaagcagctatcaaaacatctaggt
gctagagtcatggtcaccactggtgggaccaatctcaaagatgatatcatgcgactttat
gaaaatgtacatatagtaatagcaactccaggtcgtatattggatttaatggacaaagga
gttgccaagatgagcaaatgtgcatttctttgccttgatgaagctgataaactgttatca
caagatttcaagaatatgctagacaggtgcataaacttcctcccaaatgatagacaaatt
atgttgttttctgcaacttttcctttgtcagtacaggaatttatgacacgtcatttaaac
aaaccatatgaaataaatctcatggatgaacttacattgaaaggtattacacaatattac
gcctttgtacaagagaagcaaaaagtacattgtctgaacacattattttctaagctacaa
atcaaccagtcaatcatattttgtaactctacacaaagagtggaactccttgccaggaaa
attacagagctgggttattcctgcttttatatccatgcgaaaatgagacaagaacacaga
aaccgaatattccatgacttccgtaacggtgcctgcagaaaccttgtatgctcagatttg
tttacacgtggtattgatatacaagcagtgaacgtggtgatcaactttgattttcccaaa
catgctgaaacttacctccatcgtattggaagatctggtcgctatggccaccttggaatc
gcacttaatctcatcacatatgaagaccgcttttctctttatcaaattgaacgtgaactc
ggcacggaaattaagccgataccgggcagcatcgacaaaagcttgtatgtcgcagaatat
cattcattacctgacgaagcggacggtcagaatgaagaaaagtaa
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