Saccoglossus kowalevskii (acorn worm): 100379085
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Entry
100379085 CDS
T04123
Name
(RefSeq) superkiller viralicidic activity 2-like 2-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100379085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sko03019
]
100379085
03041 Spliceosome [BR:
sko03041
]
100379085
03009 Ribosome biogenesis [BR:
sko03009
]
100379085
03016 Transfer RNA biogenesis [BR:
sko03016
]
100379085
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100379085
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100379085
Spliceosome [BR:
sko03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100379085
Complex C
U4/U6.U5 tri-SnRNP related factors
100379085
Ribosome biogenesis [BR:
sko03009
]
Eukaryotic type
Pre-60S particles
Helicases
100379085
Transfer RNA biogenesis [BR:
sko03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100379085
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100379085
NCBI-ProteinID:
XP_006825596
LinkDB
All DBs
Position
Un
AA seq
1029 aa
AA seq
DB search
MAEAFGEDIFSVFEEDGPSKQDKSKRCKAEDVSSHAHVGNVVANSSGLKRELQSSGESES
KKPRLASALCIAEDLNQSEILPRVKVLPVETLEACTHEVAVPHDAEYEPLKPTGKKAAKE
YPFILDPFQKEALKCLENNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQRVIYTTPIKALS
NQKYRELYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIH
YMRDKERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDYRPVP
LQHYIFPSGGDGLHLVVDENGEFRDDNFNAAMAILRDGGDAAKGDQALRGRKGGTRGPSN
CFKIVKMIMERNFSPVIVFSFSKKECEAYAMQMSKIEFNTSAEKNLVEEVFSNAIDCLSD
EDKKLPQVESVLPLLKRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFAMGLNMPA
RTVLFTNARKFDGKDFRWITSGEYIQMSGRAGRRGLDDRGIVIMMIDEKMSAGVGKNLLQ
GKADALNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPEMIDKLKKLEKDYN
GVVIPNEDSVESYYKIRQQLDKLGKEVQRFINLPKYCLPYLQPGRLVRVRNDDEDFSWGV
VVNFQKKANQSNKSNPKEPVYVAEVLLECSKDSIKNSASESAKPPKPNEKGEMVVVPVML
HLLIQISSIRLYIPKDLRPYDNRQSVLKSIKEVRKRFPDGVPLLDPIDDMGIKESGLKKV
IEKIEAFEHRMYSHSLHNDPQLEKLYDMYEKKAQLASEVKAVKQELRKAKTVLQMDELKC
RKRVLRRLGYATVSDVIEMKGRVACEISSGDELLLTEMIFNGVFNELKCEQIIALLSVFV
FQEKANEMPKLTEELSGPLRQMQESARRIAKVSSEAKLEVDEEDYIESFCPHLMDVCYAW
ANGASFLQICQMTDVYEGSIIRCMRRLEELLREMCQAAKAIGNTDLENKFAEGITKIKRD
IVFAASLYL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcatttggagaggatatatttagcgttttcgaagaagatggtccatcaaaa
caagataaaagtaaacgttgcaaagcagaagacgtttcatcccatgctcatgtcggcaat
gtggttgccaattcttctggcctgaaaagagagttacagtcatccggggaaagtgaaagt
aaaaagccaagactagcatcagcactgtgcatagctgaagatttaaatcaatcggaaatt
ttgcctcgagtgaaagtattgccagttgaaacactagaagcatgtacccatgaagtagct
gtgccgcatgacgctgaatacgaaccattgaaaccaacgggtaaaaaagctgctaaggaa
tatccttttattttagatcctttccagaaagaggctttgaaatgtctggaaaacaaccaa
tcagtgctggtgtctgcgcatacatcagctggcaagactgtggtggccgagtacgcgata
gccatgtcattacgtgataaacagagagtgatttatacgacaccgatcaaagctctgagt
aatcagaaatacagagagttatacgaagaattccaagatgtcggtttgatgacgggagat
gtgacgataaatccaacagccagctgtcttgtcatgacaacagaaattcttcgtagtatg
ttataccgaggttctgagattatgcgagaagttgcgtgggtggtctttgatgagattcat
tacatgcgagataaagaacgtggtgtggtttgggaagagacaattattctgcttccagac
aatgtacattacgtattcttatctgctacaatacctaatgctaaacagtttgctgaatgg
atttgtcatttacacaagcagccttgtcatgtggtatacactgactatcgtcctgtacca
ttgcagcattacatctttccttctggtggtgatggattacatcttgttgtcgatgaaaat
ggtgagttccgtgatgataacttcaatgcggcaatggccatccttcgtgatggcggggac
gcggcaaagggagaccaagctctgagaggaaggaaaggtggcaccagaggtccatcaaac
tgcttcaagatcgtcaaaatgatcatggagaggaatttttctcccgtaatcgtgttcagt
ttcagtaaaaaagaatgcgaggcatatgcaatgcagatgtcaaagatagaatttaatacg
tccgctgagaagaatttggtggaagaagtattcagtaacgctattgattgcttgtcagat
gaagataaaaagttaccgcaggttgagagcgtattaccgctcttgaaacgagggattggt
atacatcattctggattattacctatactcaaggaaacgatagaaatcctgttttcagaa
ggtttgatcaaagcactgttcgctacggagacgtttgcgatgggtctgaacatgcctgcg
aggactgtcttgttcacgaatgcaaggaagtttgatggtaaagacttcagatggatcaca
tccggtgaatacattcaaatgagtggacgtgctggacgacgtggtttagatgaccggggt
atcgtcataatgatgattgatgagaaaatgagtgcgggagtcggtaaaaaccttctacag
ggtaaagcggatgccctgaacagtgcgttccatttaacgtacaatatggtgttgaatcta
ctcagagtagaagaaataaacccagagtacatgctagaacgatcgttttatcagtttcag
aactacgcagcgataccagaaatgatagacaaattaaagaaactagagaaagattataat
ggcgtggtgataccaaatgaagacagtgttgaatcttactataaaataagacaacagtta
gataagttaggaaaagaagtccaaaggtttataaatcttccaaagtattgtctgccatat
ttacagcctgggaggcttgtccgggttagaaacgacgatgaagacttcagttggggcgtt
gttgttaatttccaaaagaaagcaaaccaatcaaacaaaagtaatcctaaagaaccagta
tatgttgcggaagtcttgttagagtgttcaaaagacagcatcaaaaactctgcatccgag
tctgccaaacctccaaaacctaatgaaaagggagagatggtggttgtcccggtgatgcta
cacttattgatacagatcagcagtataagactttatattcctaaagatttgcggccgtat
gataacaggcaaagtgttctcaaatcaataaaggaagttcgaaaaaggtttccagatggt
gtaccgttattagatcctatagatgacatgggaataaaagagtctgggctgaaaaaagtc
attgagaaaattgaggcgtttgagcatcgtatgtattcccactcactgcataatgatccc
caattagagaagctgtatgatatgtatgaaaagaaagcacagcttgcgtcagaagtgaaa
gcagtgaaacaagaattgaggaaagccaaaacagttcttcagatggatgaattgaaatgt
cggaagagggtgttgaggaggctgggatatgccaccgtatctgatgtgattgaaatgaag
gggagggtagcatgtgaaatcagtagtggagatgagttacttttaacagagatgatattc
aatggtgtcttcaatgaattgaagtgtgagcaaatcatagcattgttgtcagtgtttgta
tttcaagagaaagctaacgagatgccaaaattgacggaagaactttctggaccacttcgg
caaatgcaggaatctgctcgtagaattgccaaagtgagttctgaagccaaacttgaagtt
gatgaagaagactacatagaatcgttttgtcctcatctaatggatgtgtgctatgcctgg
gccaatggtgcctcgtttttacagatttgtcaaatgacagacgtatatgaaggcagtatt
attcgatgtatgcggcgattggaagaactccttcgtgagatgtgtcaggctgccaaggca
atcggtaatacagaccttgagaacaagtttgccgaaggcatcacaaaaatcaagagagac
atagtattcgcagcaagtctatacttataa
DBGET
integrated database retrieval system
