Saccoglossus kowalevskii (acorn worm): 102804894
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Entry
102804894 CDS
T04123
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102804894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sko03021
]
102804894
03019 Messenger RNA biogenesis [BR:
sko03019
]
102804894
Transcription machinery [BR:
sko03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102804894
Messenger RNA biogenesis [BR:
sko03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102804894
U7-dependent histone pre-mRNA processing factors
102804894
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
GCP5-Mod21_N
Motif
Other DBs
NCBI-GeneID:
102804894
NCBI-ProteinID:
XP_077868134
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MAVNRSIAAQFFMEEEDGMAPEKLESLSDKVVDLLNQAHLMTKDVQKIGNLKQVQELIVN
RDTTLLDSFLDEMLQFQHDKSADVKKFVVGFIEEACKKDTELLSNVVVHLNMMLSDVTQN
VAVVKKVILCNTQLYKVALKWICKSKTIREKMETTWDVMTEMKNKIKAMLDSENDGIRTH
VIKFLDMLIVVLSSKTVDSDVPKKSEGDVSLDQIPQNHPILKYEELKSEGQSTFENLIKF
MASPSITSVNLMATMGTMTTIGKQRPIFLSKVVQAFESLHVNLPPTLAKSQVNSVRKNLK
MQLLSLLRHPSSVEFHPQITTLLTDLGATPQEISKNIARPAETSKRARTVDEDATASTSK
KAKLSEEPAVPSTSMVAKKPTTSSPISDVDLMAEEIQPLLNVALPDTMPVHFQATYTPVE
SAGNNQQILHLSRMMATQFVAAGFQPTSKPASTADTAVTSSQSETAQGIQTVVGGLTRKP
EEASKKKTSMTPIPMVSTQKGVRRIKLFKLSEVTKPLSEPVLKGLTIGAARRILDAEKKA
IQGGVSEVRTKIIVSLVTLFGEELSNLLRDFIFEDLRNRSELAFSWVFHEYCSYQGYMPK
TTDKEQSFIRYDNCLTDLLKGIKERDTREGLFSHLILEAPLLTPNALEILKEYCEDESHV
YIGMSTLRDLVLKRPADELNYLIVLLDLTFHEKPDVRNQAVQFTKRLYERPKLRETIELS
DKLATVYVATSALIKRTVLRVLENPVRGMGMGSPELLLLVENCPKGAETLITRMLHILTD
KAPPSSELVKRVRDLYHKRVSDVRFLIPVLIGLEKIEVIAALPKLIKLNPIVVKEVFHRL
LMSHQGDNSAGQSPLTPAELLIALHKIDSSKCDMKSIIKATSLCFNEKIIYTQEVLAVVM
QQLMEQNPIPTLLMRTVIQSLSMYPRLIGFVMNILQRLIIRQVWKQKKVWEGFIKCCQRT
KPQSFQVLLQLPSAQLKNVFEMSPDLREPLLEHVQLFTQHQRGHIPKSVMEVLETLTPEE
KKASEARKIEEMKKGEIMKQQEKEAQQLTQEKIYQQKLAEERLKQQKLLQERIAKEKELK
LLEEQKLKEVTPEEESMETDQLAILEEPMES
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcaataggtccattgctgcccagttctttatggaagaagaagatggaatggct
cccgaaaaactggagtcgttgtcagacaaggttgttgatttattgaatcaagcacatctt
atgactaaagatgtccagaagattggtaatttgaaacaagttcaagagttgattgtgaac
agagacaccaccttattagacagctttctagatgaaatgcttcaattccagcatgacaag
tcagctgatgtcaagaagtttgttgttggttttattgaagaagcatgtaaaaaggacact
gaattgctgagtaacgtggttgttcatctgaatatgatgctgagtgatgtcactcagaac
gtagcagttgtcaagaaagtaatactttgtaatacacagttatacaaagtggcgctcaag
tggatttgtaaatccaaaacaatccgcgaaaaaatggaaactacttgggatgtaatgaca
gagatgaagaacaaaattaaagccatgttagattctgagaatgatggtatacgaactcat
gttatcaaattcctggacatgctaattgtagtgttgtccagtaagactgttgattcagat
gttcccaagaaatcagaaggagatgtttcattggaccagataccacagaatcatcccatt
ctgaaatatgaagagttgaagagtgaaggacagagtacatttgagaacttaatcaaattt
atggcatcgccaagtataaccagtgttaacctgatggcaactatgggtacaatgacaacc
attgggaaacaaagaccaatttttttgtctaaggtggtccaggcatttgagtccctacat
gtgaatttacctcctacccttgctaagtcacaagtcaacagtgtcaggaaaaatttaaag
atgcagttactaagtcttctaagacacccatcatcagttgagttccatccacagataaca
acactcttaacagacttaggagccactcctcaagagatttctaagaatattgccagacca
gctgagacttctaaaagagcacgtactgtggatgaagatgcaacagcttccacttcaaag
aaagctaagctgagcgaggagcctgcagtgccatcaacatcaatggttgctaagaaacca
actacatcatctcctatatcagatgtagatctcatggctgaagaaattcaacctctattg
aatgttgcactaccagacaccatgcctgttcactttcaagccacctatacaccagtagaa
tctgcaggaaataatcaacaaatattgcatttatcccgaatgatggcaacacagtttgtg
gcagctggtttccaaccaacaagcaaaccggcatcaactgctgacactgctgtaacaagc
tcacaatcagagactgcacagggaatacaaactgttgttggtggtcttactcggaaacca
gaggaagccagtaaaaagaaaacatccatgacacccataccaatggtgtcaacacagaaa
ggtgtaaggcgtattaaattattcaaactatcagaagtaactaagccattgtcagaacct
gtattgaaaggtttaactattggtgccgctagaagaatacttgatgctgaaaaaaaagca
attcaaggaggtgtaagtgaagtccgaacaaaaatcattgtcagcttggtgacactgttt
ggagaagaattgtcaaatttattacgagactttatttttgaagacttacgaaatagatct
gaattggcattctcctgggtgtttcatgagtactgtagttaccaaggttacatgccaaaa
actactgataaagaacaaagcttcattagatatgataattgtttaacagatttgttgaaa
ggaattaaggaaagggatacaagagaagggttattttcacatctcatattagaagcacct
ttattaacaccaaatgcactggaaatacttaaagaatactgtgaagatgagtcacatgta
tatattggcatgtccacacttcgtgacctggttttaaaacgtccagcagatgaacttaat
tatcttattgtactattggatttgacattccatgaaaaaccagatgttagaaaccaagca
gtacagtttacaaagagactgtatgaaagaccaaaactaagagaaacaatagagctgtct
gacaaattggctacagtatatgttgccacttcagctttaatcaagaggactgtactcaga
gtactagagaatccggtgagaggtatgggaatgggttccccagaacttctcttgcttgta
gagaattgtcctaaaggtgctgagactctaattactaggatgttacatatacttacagat
aaagcgccaccatcatcagaacttgtgaaaagagtgcgtgatttgtatcataaacgtgtc
tccgatgtcagatttctcattcctgtattaattggactagaaaagattgaggtgatcgct
gctctgcccaagctcatcaaattaaaccctatagtggtgaaagaagtgtttcatcgttta
ttgatgagtcaccaaggagataacagtgctggtcaaagccccctaactccagctgaattg
cttattgccttacataaaatagattcatctaagtgtgatatgaaatctatcattaaagct
accagtctttgtttcaatgaaaagataatatatactcaggaagtattagcagtagttatg
caacagctgatggaacagaatcctattcctactttgctgatgagaacagtgattcagtca
ctgagcatgtaccctcgtctcataggctttgttatgaatatcctacaaagattgattatt
agacaagtttggaaacagaagaaagtttgggaagggttcatcaaatgttgtcagagaact
aaaccacagtcttttcaagttcttctacaactgccatctgctcaattgaagaatgtattt
gagatgagtcctgatttacgagagccattactagaacatgtacagttatttacacagcac
cagaggggacacattccaaagtctgttatggaggtactagagacgctcacccctgaggaa
aagaaggcatctgaagccaggaaaattgaggaaatgaaaaaaggtgaaatcatgaagcag
caagaaaaagaagctcagcaattaacccaagagaaaatctatcaacagaaacttgctgaa
gagaggttgaaacaacagaaactactccaagaaagaattgctaaagagaaagaattgaag
ttgttagaagagcagaaactgaaagaggtcacacccgaggaagaaagtatggaaacagat
cagctagcaattctcgaggaaccaatggaatcatag
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integrated database retrieval system
