Streptomyces kordofanensis: LUW75_09535
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Entry
LUW75_09535 CDS
T11797
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
skor Streptomyces kordofanensis
Brite
KEGG Orthology (KO) [BR:
skor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
skor03016
]
LUW75_09535
Enzymes [BR:
skor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LUW75_09535
Transfer RNA biogenesis [BR:
skor03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LUW75_09535
Prokaryotic type
tRNA splicing ligases
LUW75_09535
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
URM90189
LinkDB
All DBs
Position
complement(2110833..2112026)
Genome browser
AA seq
397 aa
AA seq
DB search
MSYVEIPGAKVPIRMWADPATVEDVALRQLRNTATLPWIEGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVRTSLTADDLPDDLSGLRSRIERAIPVGRGMHEEAVDPG
RLPGLAAPGWDDLWTRFGGIAEAVRFRQERAAKQMGTLGSGNHFVEVCLDSTGSVWLMLH
SGSRNIGKELAEHHIGVARGLPHNQDLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
SVMMALLQDVVRGEFEKTGVTFEREISCHHNYVAEERYDGVDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRRMSRNAAKRRFSTQDLEEQTRGVECRKDSG
VVDEIPGAYKPIEKVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtcgagatcccgggggcgaaggtacccatccggatgtgggcggaccccgcc
acggtggaggacgtcgccctccggcagctgcggaacaccgcgaccctgccgtggatcgag
gggctcgccgtcatgccggacgtccacttcggcaagggcgccacggtcggatccgtcatc
gccatgcgcggcgcggtctgcccggcggcggtcggggtggacatcggatgcggcatgtcg
gccgtcaggacgtcgctcaccgcggacgacctgccggacgacctgtccgggctgcggtcg
cggatcgagcgggccatcccggtgggccgggggatgcacgaggaggcggtcgaccccggg
cggctcccgggcctcgcggcgcccgggtgggacgacctgtggacgcggttcggaggcatc
gcggaggcggtgaggttccgccaggagcgggccgccaagcagatggggacgctcggaagc
ggcaaccacttcgtcgaggtctgcctcgactcgaccggatcggtgtggctgatgctccac
tccgggtcgcggaacatcggcaaggagctcgccgagcaccacatcggcgtcgcgcggggg
ctgccccacaaccaggacctggtcgaccgggatctcgcggtgttcgtcgccgacacgccg
cagatggccgcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
tcggtcatgatggcgctcctgcaggacgtcgttcgcggcgagttcgagaagaccggggtg
accttcgagcgggagatctcctgccaccacaactacgtggcggaggagcggtacgacggt
gtggacctgctcgtcacccgcaagggcgcgatccgcgccgggagcggcgagtacgggatc
atccccggttccatgggcaccggctcgtacatcgtgaagggcctcgggaacgagaagtcc
ttcaactccgcctcgcacggtgccggccggcggatgagccggaacgccgccaagcgccgg
ttctccacgcaggacctggaggagcagacgcggggcgtggagtgccgcaaggactccggc
gtcgtcgacgagatccccggcgcgtacaagccgatcgagaaggtcatcgaccagcagcgc
gacctggtggaggtcgtggcgaagctgaagcaggtcgtctgcgtgaagggctga
DBGET
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