Sphingomonas koreensis: BRX40_01185
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Entry
BRX40_01185 CDS
T04828
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
skr
Sphingomonas koreensis
Pathway
skr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRX40_01185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skr03019
]
BRX40_01185
03009 Ribosome biogenesis [BR:
skr03009
]
BRX40_01185
Enzymes [BR:
skr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BRX40_01185
Messenger RNA biogenesis [BR:
skr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BRX40_01185
Ribosome biogenesis [BR:
skr03009
]
Prokaryotic type
rRNA processing factors
BRX40_01185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
APR54736
UniProt:
A0A1L6JFM9
LinkDB
All DBs
Position
complement(233256..235871)
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AA seq
871 aa
AA seq
DB search
MLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVEYGGN
RHGFLAFSEIHPDYYQIPKEDRDALLREEAEHAAEEAALREEADDDHDDEHDEHDGAEDG
DVEVVERPGDEDEETSEGEEGASANGGRRRRGRKGSDDQVEALRQRRMNLRRRYKIQDVI
RRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTAHGGGISRKISSSADRKRLKS
IMSDLKLPPTMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTLKSSAPALVYGDSDL
IKRAIRDIYNRDIEEVIVEGEEGYRHAKDFMKLLMPSHAKKVKHYSDAVPLFQRAHVEDQ
LSAMYHPVVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEATQEIARQL
RLRDMAGLVVIDFIDMDHGSNVRKVEKAMKEALKNDRARIQVGRISAFGLMEMSRQRLRT
GVLEASTVTCPHCEGTGLVRTASSAGLSALRLIEDEAARGRGSLLTLRCSQEAAFYVLNK
KRADIAEIEDRYGVTVEILSDGELEGARMSVEASGPPPAHAPKFAAAIEEIEEDIVEEID
EEEDEEDVEAREPRRERSDRGEGEGEGRKRRRRRRGRRGRRDDEHGEHGERQDAEDAADE
DGEAEPEEAGEAETLAETAADEGETRKRRRRGRRGGRRGATGEGGEAVEAEVAEPAGDVE
PVAVVAEPVVEEAPAKPKRTRRKKADVEAEAPAVEAAPEPVVEAAPEPVVAEEAPAKPKR
SRRKKADVEAEAPAVEAAPEPVAEAAAEPVAEEAPAKPKRRSRAKAAAPVEQDLEPTAAE
TAAAEPADGEPEAEGEGGEPRRGWWQRTFGA
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgacgcacgccaccgggaagagacccgcgtggcggtcgtcaaagggaaccga
atcgaggagtttgatttcgagtccgccgagcgcaagcagctcaagggcaatatctatctg
gccaaggtaacccgcgtggagccctcgctccaggcggcgttcgtcgaatatggcggcaac
cgccacggcttcctggccttcagcgaaatccaccccgattactatcagatccccaaggag
gatcgcgacgcgctgctgcgcgaagaggccgagcatgccgccgaggaagcggcgctgcgc
gaagaggccgatgacgaccatgacgacgagcatgacgagcatgacggcgccgaggatggc
gacgtcgaggtcgtcgagcgcccgggcgacgaggatgaggaaacctcggaaggcgaagag
ggcgccagcgccaatggcggccgtcgccgccgcggccgcaagggcagcgacgatcaggtc
gaggcgctgcgccagcgccgcatgaacctgcgccgccgctacaagatccaggacgtgatc
cgccgccgccaggtgctgctggtccaggtcgtcaaggaagagcgcggcaacaagggcgca
gcgctgaccacctatctcagccttgccggccgttattgcgtgctgatgcccaacaccgcg
catggcggcgggatcagccgcaagatcagctcgtccgccgatcgcaagcgcctgaagtcg
atcatgtcggacctcaagctgccgccgacgatgggttgcatcgtccgtaccgcggggctc
cagcgcaccaagaccgagatcaagcgcgacttcgactatctcgcgcggctgtgggacgag
attcgcgagaatacgctcaagtcgtcggcgccggcgctggtctatggcgacagcgacctg
atcaagcgtgcgatccgcgacatctacaaccgcgacatcgaggaagtgatcgtcgaaggc
gaggagggctaccgccacgccaaggacttcatgaagctgctgatgccgagccatgccaag
aaggtgaagcattattcggatgcggtgccgctgttccagcgcgcgcatgtcgaggatcag
ctgtcggcgatgtaccatccggtggtgcagctgaaatccggcggctatctcgtcatcaac
ccgaccgaggcgctggtcagcatcgacatcaactcgggccggtcgacgcgcgagcataat
atcgagcagaccgcgaccgcgaccaatctggaagcgacgcaggaaatcgcccgccagctg
cgcctgcgcgacatggccgggctcgtcgtcatcgacttcatcgacatggaccacggatcg
aacgtccggaaggtcgagaaggcgatgaaggaggcgctcaagaacgatcgcgcgcgcatc
caggtcggccgcatcagtgccttcggcctgatggagatgagccgccagcggctgcgcacc
ggcgtgctcgaggcatcgaccgtgacctgcccgcactgcgagggcacgggtctcgtccgc
accgcctcgtcggcgggcctgtccgcgctgcgcttgatcgaggacgaggccgcgcgcggc
cgcggctcgctgctgacgctgcggtgcagccaggaagcggccttctatgtgctcaacaag
aagcgcgccgacatcgccgagatcgaggaccgctatggcgtgacggtcgagatcctgtcg
gacggcgagctcgaaggcgcgcgcatgtcggtcgaggccagcgggcctcctcccgcgcac
gcacccaagttcgccgccgcgatcgaggagatcgaggaagatatcgtcgaggagatcgac
gaggaggaggacgaagaggacgtcgaggcccgcgagccgcgccgcgagcgcagcgatcgg
ggcgagggcgaaggcgagggccgcaagcgccgccgccgccgtcgtggtcgccgcggccgc
cgcgacgacgagcatggcgagcacggcgagcgtcaggacgctgaggatgcggcggacgag
gacggcgaagccgagccggaggaagcaggcgaagccgagacgttggccgaaactgccgcc
gacgagggcgagacgcgcaagcgccgccgccgcggccgtcgtggcggtcgccgtggtgcg
accggcgagggtggtgaggccgtcgaggccgaggttgcagagccggccggggacgtcgag
ccggtagcggtcgtggctgagccggttgtcgaggaagcgccggccaagcccaaacggacg
cgccggaagaaggccgatgtcgaggcggaagcgcctgccgtcgaggctgcgcccgagccg
gtggtcgaagcggcgcccgagccggttgttgccgaggaagcgccggccaagcccaagcgc
tcgcgccggaagaaggccgatgtcgaggcggaagcgcccgccgtcgaggctgcgccggag
ccggtggctgaagcggccgccgaaccggttgccgaagaagcaccggccaagcccaagcgc
cgtagccgggccaaggccgccgcgccggtcgagcaggatctggaaccgaccgccgcggaa
acggcagcggccgaaccggccgatggcgaacccgaagccgaaggtgaaggcggtgagccg
cgtcgcggctggtggcagcgcaccttcggagcatga
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