Sphingomonas koreensis: BRX40_03395
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Entry
BRX40_03395 CDS
T04828
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
skr
Sphingomonas koreensis
Pathway
skr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRX40_03395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skr03019
]
BRX40_03395
03016 Transfer RNA biogenesis [BR:
skr03016
]
BRX40_03395
Enzymes [BR:
skr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BRX40_03395
Messenger RNA biogenesis [BR:
skr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BRX40_03395
Transfer RNA biogenesis [BR:
skr03016
]
Prokaryotic type
tRNA degradation factors
BRX40_03395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
GCH_III
Motif
Other DBs
NCBI-ProteinID:
APR51605
UniProt:
A0A1L6J6R6
LinkDB
All DBs
Position
complement(686097..688451)
Genome browser
AA seq
784 aa
AA seq
DB search
MFDKKTVSIEWGGQTLTLETGKVARQADGAIMATLGETVVLCAVTAAKSVKDGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGENEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDEQVAAGDLDLVVA
ATHDAVMMVESEANELSEEVMLGAVLFAHDACKEVIKAIIKLAEQAAKEPWEIASSDDNA
KLKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAKAKESFAADGLSPQEVMAGIKLTKK
LEAEIVRTAILKDGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQTIATATLGTK
DAEQMIDGLNGLSYQHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPTKD
EFPYTIRLTSDITESNGSSSMASVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALNQAKEGRAHILGEMNK
ALGETRSELSAHAPRIETMQIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGVIKISS
SDVSQIEAAMNWIKGIVEEAEVGKIYNGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERV
EKVSDVLSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGAELEDTRPAREPREDRGPRGDR
GPRRDGGDRGPRRDGDRGPRRDGGDRGPRGDRGDRGPRRERSESKDEGGEDIGLPAFLTG
GSDD
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacaagaaaaccgtatcgatcgagtggggcggacaaaccctgacactcgaaacg
ggcaaggttgcccgtcaggccgatggcgccatcatggcaacgctcggcgaaaccgtggtg
ctgtgcgccgtcaccgccgccaagtcggtgaaggacgggcaggatttcttcccgctcacc
gtccactatcaggaaaagtacagcgcggccggccgtatccccggcggcttcttcaagcgc
gagcgcggcgcgaccgagaaggagacgctggtctcgcgtctcatcgaccgcccgatccgc
ccgctgttcccggaaggcttctacaacgagatcaacgccatcgctcaggtgctgagctat
gacggcgagaacgagccggacatcctcgcgatggtcgcggcgtcggccgcgctcaccatc
tcgggcgtgcccttcatgggcccgatcggcgccgcgcgcgtcggctatgtcgatggcgag
tacatcctcaacccgaccgacgagcaggttgccgcgggcgacctcgacctggtcgtcgcc
gcgacgcacgacgcggtgatgatggtcgaatccgaagcgaacgagctctcggaagaggtc
atgctgggtgcggtcctgttcgcgcacgacgcgtgcaaggaagtcatcaaggcgatcatc
aagctcgccgagcaggccgccaaggagccgtgggaaatcgcgtcgtcggatgacaacgcc
aagctcaaggacaagctcaagaagctgatcggcaaggatattgccgccgcctacaagctg
accgacaagtcggcccgctcgaacgcgctcaatgaagcgcgtgcgaaggcgaaggaatcg
ttcgctgccgacggcctcagcccccaggaagtcatggccggcatcaagctgaccaagaag
ctggaagcggagatcgtccgcaccgctatcctcaaggacggcaagcgcatcgatggccgc
accaccacgcagatccgccccatcgtggcggaaacgcacttccttccgcgtgcgcatggc
tcggcgctgttcacccgcggcgagacccagacgatcgccacggcgacgctgggcaccaag
gatgcggagcagatgatcgacggcctcaatggcctgtcgtaccagcacttcatgctgcac
tataacttcccgccctattcggtcggtgaagtgggccgcttcggcgcgccgggccgtcgc
gaagtcggtcatggcaagctggcatggcgcgcgctgcacccggtgctgccgaccaaggac
gagttcccctacacgatccgcctgaccagcgacatcaccgagtcgaacggctcgtcgtcg
atggcgtcggtgtgcggcgggtcgctcgcgatgatggacgccggcgtgccgatcaagcgt
ccggtctcgggcattgccatgggcctgatcctcgagggcaaggattatgcgatcctcagc
gacatccttggcgacgaggatcacctcggcgacatggacttcaaggttgcgggcacgtcc
gaaggcatcaccacgatgcagatggacatcaagatcgcgggcatcacgcgcgagatcttc
gaggctgcgctgaaccaggccaaggaaggccgtgcgcatatcctgggcgagatgaacaag
gctctgggcgagacccgctcggagttgtcggcgcatgcgccgcgcatcgagacgatgcag
atcgacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtcatccgcgagatc
gtcgccaccaccggtgccaaggtggatatcgacgacgagggcgtgatcaagatttcgtcg
tccgacgtgtcgcagatcgaagccgcgatgaactggatcaagggcatcgtcgaagaggcg
gaagtcggcaaaatctacaacggcaaggtcgtcaacctcgtcgatttcggcgcgttcgtg
aatttcatgggcggcaaggacggcctggttcacgtctccgagatcaagaacgagcgcgtc
gagaaggtcagcgatgtcctgagcgaaggccaggaggtcaaggtcaaggttctcgagatc
gaccagcgcggcaaggtgcgcctgtcgatgcgcgtcgtcgatcaggagactggcgctgag
ctcgaggatacgcgtccggcccgcgaaccgcgcgaggatcgcggtccccgtggcgaccgt
ggtccgcgccgtgacggtggcgatcgcggcccgcgtcgcgatggcgaccgtggtccgcgc
cgcgatggcggcgaccgtggcccgcggggcgatcgcggtgaccgcggcccgcgccgcgag
cgttcggagtcgaaggacgaaggcggcgaggacatcggcctccccgcattcctgactggc
ggtagcgacgactaa
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