Sphingomonas koreensis: BRX40_10915
Help
Entry
BRX40_10915 CDS
T04828
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
skr
Sphingomonas koreensis
Pathway
skr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
skr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BRX40_10915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skr03021
]
BRX40_10915
03400 DNA repair and recombination proteins [BR:
skr03400
]
BRX40_10915
Enzymes [BR:
skr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BRX40_10915
Transcription machinery [BR:
skr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BRX40_10915
DNA repair and recombination proteins [BR:
skr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BRX40_10915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
APR52865
UniProt:
A0A1L6JAB0
LinkDB
All DBs
Position
complement(2228601..2232881)
Genome browser
AA seq
1426 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIQIGIASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKIMLMDLDLEGERKELLEELATTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYISMEKENEPGQGMILGDMAEVHQALFA
GAVTLHTKITSRVPQTDEDGNTYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKDV
GDVIDEVYRHTGQKETVLFADAIMALGFRHAFKAGISFGKDDMIIPDSKDALVDETRALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAAAMMDEIKAVKTDPETGREKPANAIYM
MAHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVMEEDCGTERALEMKAIVQGGSTIASLGERILGRTT
AEDVVDPKTGEVAIATGTLLDEAMIAQIEALGIQGMKIRSPLVCEAKIGVCAKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPVDGKVEFRDVRI
IVDQRGRRVVTSRSAELAILDMDGRELAVHRIPYGAYVMFDDGHVVAKGDRMAEWDPFTM
PVITETGGTVKYQDLIDGKTLTEQVDEATGIAQRVVIENRGAAAKKEDLRPRLTLTGDSE
GEAARYMLAPGAVISVEDGATVQGGDVLARVSRESAKTRDITGGLPRVAELFEARKPKEN
AIIAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEYLVPKSKVIDVQEGDYVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDAGDTT
LLPGEQVDRDEMDETNAKLEPGQAPAQGKPILLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKQDTLIGLKENVIVGRLIPAGTGAGMNRMRIAATSRDAALRAQQRRLQEVLIAPN
SAAEERAAELAQDPIEAMATSDALEKVEVSGDGSDAAAGDYLNESE
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaacttcgcgaacccggtggccaagccggagaccttcgaccagatc
cagatcggcattgcgtcgcctgaccgcatccgttcgtggtcgttcggcgagatcaagaag
cccgagacgatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggactatgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcattgtctgcgagaagtgcggcgtcgaggtcacggtctcgaaggtccgccgcgag
cgcatgggccatatcgagctggccgcgccggtcgcgcatatctggttcctcaagagcctg
ccctcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctgtac
ttcgaatcgtacatcgtcaccgagccaggcctgaccccgctcgagaagttccagctcctc
accgaggacgagctgctcgacgcgcaggacgagtatggcgaggacgccttctcggccggc
atcggcgcggaagcggtcaagatcatgctcatggacctcgacctcgagggtgagcgcaag
gagcttctggaagaactggcgacgaccaagtcggagctgaagcccaagaagatcatcaag
cgcctgaaggtcgtggaatcgttcatcgattccggcaatcgtccggagtggatgatcctc
gacgtcgttccggtcatcccgcccgagctgcgcccgctggtgccgctcgacggcggccgc
tttgcgacctcggatctcaacgatctgtatcgccgcgtgatcaaccgcaacaaccgcctc
aagcgcctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagcggtcgacgcgctgttcgacaatggccgccgcggccgcacgatcacgggcgcc
aataagcgtccgctcaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccg
gagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgtctcgatgccaagggtctctcgatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctggacgaggtgatccgcgagcac
ccggttctgctgaaccgcgcaccgacgctccaccgcctgggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggcgttcaacgcc
gacttcgacggtgaccagatggccgtccacgttccgctgagcctcgaggctcagctggaa
gcgcgtgtcctgatgatgtcgaccaacaacatcctgtcacccgcgaacggcaagccgatc
atcgtgccgtcgcaggacatggttctcggtctctactacatctcgatggagaaggagaac
gagccgggccaggggatgatcctgggcgacatggccgaggtgcaccaggcgctgttcgcc
ggtgccgtgacgcttcacaccaagatcaccagccgcgtcccgcagacggatgaggacggc
aacacgtacatgaagcgcttcgagaccaccccgggccgcatgctgctcggcgagtgcctg
ccgaagagccacaaggtgccgttcgatgtcgtcaaccgccttctgaccaagaaggacgtg
ggcgacgtgatcgacgaggtctatcgtcacaccggccagaaggagaccgtgctgttcgcc
gacgcgatcatggcgctaggcttccgtcacgcattcaaggcgggcatctcgttcggcaag
gacgacatgatcatcccggactcgaaggatgcgctggtcgacgagacccgtgccctcgtg
aaggattacgagcagcagtatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtggcggcagcgatgatggacgagatc
aaggcggtcaagaccgaccctgagactggccgtgagaagcccgccaacgcgatctacatg
atggcgcactcgggtgcccgcggttcggcggcacagatcaagcagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggtctgaccgtccttgaatacttcaactcgacccacggcgcccgcaagggccttgcg
gacacggcgttgaagaccgcgaactcgggctacctcacccgccgccttgtcgacgtgtcg
caggactgcgtcgtcatggaggaggattgcggcactgagcgcgcgctggagatgaaggcg
atcgtgcagggcggctcgaccatcgcgtcgcttggcgagcgtatcctgggccgtaccacg
gccgaggacgtcgtcgatcccaagacgggcgaagtggcgatcgccaccggcacgctgctt
gacgaggcgatgatcgcgcagatcgaagcactcggcatccagggcatgaagatccgcagc
ccgctggtgtgcgaggccaagatcggcgtgtgcgccaagtgctacgggcgtgatctcgcc
cgcggtacgccggtgaacatcggcgaggcggtcggcgtgatcgcggcgcagtcgatcggc
gagccgggcacccagctcaccatgcgtaccttccacatcggcggcgcggcacagctcaac
gagcagtcgaacctcgaagcccccgtggacggcaaggtcgagttccgcgacgtccgcatc
atcgtcgatcagcggggtcgccgggtggtgacttcgcgctcggcggagcttgccatcctc
gacatggacgggcgcgagctggcggtgcatcgcatcccgtacggtgcgtacgtgatgttc
gatgacggccatgtcgtggccaagggcgaccgtatggccgagtgggatccgttcaccatg
ccggtgatcacggaaaccggcggtaccgtgaagtatcaggacctgatcgacggcaagacg
ctgaccgagcaggtcgacgaagcgacgggcatcgcccagcgcgtcgtcatcgagaaccgc
ggtgctgcagccaagaaggaggacctgcgtccgcgcctgaccctgaccggggacagcgag
ggtgaggccgcgcgctacatgctggcgccgggtgcagtgatctcggtcgaggacggcgcg
accgtccagggcggcgacgtcctggcgcgcgtcagccgcgaaagcgccaagacccgcgac
atcaccggcggtctgccgcgcgtcgccgagctgttcgaagcccgcaagcccaaggaaaac
gcgatcatcgcgaaggtctcgggccgcgtcgtgttcggcaaggactataaggcgaagcgc
aagatcggcatccagcccgaggatggcggcgaggtcgtcgagtatctggtgccgaagtcg
aaggtgatcgacgttcaggaaggcgactacgtcaagcgtggcgacaacctgatcggcggc
tcgcccgatccgcacgacattctcgaggtgctcggcatcgagccgctcgcggaatatctc
gtgtcggaaatccaggaagtctatcgactccagggcgtgaagatcaacgacaagcacatc
gaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgacgccggcgacaccacc
ctgctccccggcgagcaagtggatcgcgacgagatggacgagaccaacgccaagctcgag
cccggccaggcccccgcacagggcaagcccatcctgctcggcatcaccaaggcgtcgctg
cagacccgcagcttcatctcggcggcgtcgttccaggagaccacccgcgtcctcaccgag
gcggcggtccagggcaagcaggacacgctgatcggtctcaaggagaacgtgatcgtgggc
cgtctcatccccgccggcaccggcgcgggcatgaaccgcatgcgcatcgcggccaccagc
cgcgacgccgcactgcgcgcccagcagcgccgtctgcaggaagtcctcatcgcgccgaac
tcggccgctgaggagcgtgcagccgagctggcgcaggacccgatcgaggcgatggccacc
agcgacgcgctggagaaggtcgaagtctcgggcgacggcagcgacgcggccgcgggcgat
tacctgaacgagagcgagtga
DBGET
integrated database retrieval system
