Sphingomonas koreensis: BRX40_15085
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Entry
BRX40_15085 CDS
T04828
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
skr
Sphingomonas koreensis
Pathway
skr03030
DNA replication
skr03430
Mismatch repair
skr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
skr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BRX40_15085
03430 Mismatch repair
BRX40_15085
03440 Homologous recombination
BRX40_15085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skr03032
]
BRX40_15085
03400 DNA repair and recombination proteins [BR:
skr03400
]
BRX40_15085
Enzymes [BR:
skr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BRX40_15085
DNA replication proteins [BR:
skr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BRX40_15085
DNA repair and recombination proteins [BR:
skr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BRX40_15085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
DUF655
COE1_HLH
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
APR53570
UniProt:
A0A1L6JDK4
LinkDB
All DBs
Position
complement(3089590..3093072)
Genome browser
AA seq
1160 aa
AA seq
DB search
MPHSGFVPLRIFSAYTMLEGAIEPKAIAGRARELGFPAAALCDRNGLYAAMSYGDAAKKA
GVQPIVGTLLCVERPDVPEGVTPPLDWLALYAQDQRGYENLCDLVSRAHLERPIEKDAHV
LFSDLEGRTDGVIALTAGKEGALARLFAEEQDSAAFAYADRLQALFGDRLYIEIIRRLDE
VEGRAEPKLLDLAYDRGIPIVATNPACYAEPDFHQAHDAMLCIAGSAYVASDERARSSPD
AWMKPATEMKRLFDDLPEAIDNTLVVAQRCAYAAPKRKPILPSLAGDLEGEAAQLRDDAR
AGLEARLEKAGITDPAKREEYFARLAFETDIIIQMGFPGYFLIVADFIKWAKQNGIPVGP
GRGSGAGSVVAWALTITDLDPLELGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQA
KYGRNQVAQIITFGTMKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLPRSLNGV
SEFKAEYDGDEGVRHLIDLAMQLEGLPRHSSTHAAGVVIGDRPLAELVPLYRDPRSDMPV
TQFDMKYVEGAGLVKFDFLGLKTLSVLQKGVELLAARSIQIDLAALGWDDPAVYELLQRG
DTVGVFQLESEGMRRTLTAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKQGLEPIEYPH
PALEGILKETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIKAEMDAQRALFVEG
CAKVNNIAEGKANELFDLIDKFAGYGFNKSHAAAYALLAYHTAWLKAHYPHEFYAASMCF
ELGQTEKLAIFVEDMKRLGVACLPPDINASEAEFSVEAVDDGFAVRYALAGLKGVGEKAM
ELLVEERHAKGRFQSLDDFARRVDPRLLNKRQVEALAGAGGFDSIAPDRPGVYAAAETIL
AVAQRTHANRESGQGGLFGEAEPVGSAIQLPKSARWTLGQKIEAEKDSFGFFFSAHPLDR
YQHLARLHSARTIVSLNDIDIAEGGRAGATIAALIEDARWRTSARGKRYLMATLSDASGT
VPCTCFDDFTAKEMEDAARIGGCGILTLELDRRAGEDSARVTVRKVQPFEGMAKDVRLTL
RLTVTEPTALAAIALQLADARGGRCEVVLDAPLPSGGEAELILGRNFRIDGELAARIEGL
PGVAACELKPTDLPRLALAS
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccccattccggcttcgtccccctccgcatcttttccgcctacacgatgctggagggc
gcgatcgagcccaaggcgattgccgggcgggcgcgcgaactgggatttccggcggccgcc
ctctgcgatcgcaacggcctctacgcggcgatgtcctatggcgatgccgccaagaaagcg
ggcgtccagccgatcgtcggcaccctgctttgtgtcgagcggccggatgtgcccgagggt
gtcacccctccgctcgactggctggcactctacgcgcaggatcaacgcggctacgaaaat
ctctgcgatctcgtttcccgcgcacatctcgaacgtccgatcgagaaggatgcgcatgtc
ctcttctccgatctcgagggccgtaccgacggcgtgatcgcactgaccgcgggcaaggag
ggtgcgctcgcccgtctgttcgccgaggagcaggacagcgccgctttcgcctatgccgac
cggcttcaggcgctgttcggcgatcgtctctatatcgagatcatccgccgacttgacgag
gtcgagggcagggcggagccgaagctgcttgacctcgcctatgatcgcggcatcccgatc
gtcgcgaccaacccggcctgctatgccgagcccgatttccatcaggcgcatgatgcgatg
ctgtgcatcgccggttccgcctatgtcgccagcgacgagcgtgcccgctcctcgcccgac
gcatggatgaagcccgcgaccgagatgaagcggctgttcgacgatctgcccgaggcgatc
gacaacacgctcgtcgtcgcgcagcgctgtgcctatgcggcgcccaagcgcaagccgatc
ctccccagccttgccggcgatctcgagggcgaggctgcgcagctgcgcgacgacgcgcgc
gcaggcctcgaagcgcggctggagaaggcgggcatcaccgatccggcgaaacgcgaggag
tatttcgcgcggcttgcgttcgagaccgacatcatcatccagatgggcttccccggctac
ttcctgatcgtcgcggacttcatcaaatgggccaagcagaacggcattccggtcgggccg
ggccgcggctcgggcgcgggttcggtcgtcgcctgggcgctgaccatcaccgatctggac
ccgctcgaactcggcctgctgttcgaacgcttcctcaaccccgaacgcgtgtcgatgccc
gacttcgacatcgacttctgcgaaacccgccgcggcgaggtgatccgctatgtgcaggcc
aagtacggccgcaatcaggtcgcgcagatcatcaccttcggaacgatgaaggcgcgcgcg
gtgctcaaggacaccgggcgcgtgttgcagatgagctatggtcaggtcgaccggctcgcc
aagctcgtcccgaaccatccgaccgatccgtggacgctgccgcgctcgctcaacggcgtc
agcgagttcaaggccgaatatgacggcgacgagggggtcaggcaccttatcgacctcgcc
atgcagctcgaagggctgccgcgccacagctcgacccacgccgcgggcgtggtgatcggc
gatcgtccgcttgccgagctggtcccgctctaccgcgatccgcgatcggacatgcccgtc
acccagttcgacatgaaatatgtcgagggcgcgggactggtgaagttcgactttctcggc
ctcaagacgctgtcggtgctgcaaaagggtgtcgagctgctcgccgcgcgcagcatccag
atcgatctcgccgcgctcggctgggatgatccggcggtctacgaactgctccagcgcggc
gacacggtcggcgtgttccagctggaatcggaaggcatgcggcgcacgctgaccgcggtt
cgtccgaccaatttcggcgacatcatcgcgctcgtctcgctctaccgcccgggtccgatg
gacaacatcccgatgttcgggcggcgcaagcaggggcttgagccgatcgagtatccgcac
cctgcactcgaagggatcctcaaggaaacctacggcatcttcgtctatcaggaacaggtg
atgcaggccgcgcagatcctggccggctattcgctcggcggcgccgacctgctgcgccgc
gcgatgggcaagaagatcaaggccgagatggacgcgcagcgtgcgctgttcgtcgaaggc
tgcgccaaggtgaacaatatcgccgagggcaaggcgaacgagctgttcgacttgatcgac
aagttcgccggctacggtttcaacaagtcgcacgccgccgcctacgcactgctcgcctac
cacaccgcctggctcaaggcgcattatccgcacgaattctacgccgcctcgatgtgcttc
gaacttggccagaccgagaagctggcgatcttcgtcgaggacatgaagcggctcggcgtc
gcctgcctgccgcccgacatcaatgccagcgaagccgaattctcggtcgaggcggtcgat
gacgggttcgcggtccgctatgcgctcgccggcctcaagggcgtcggcgaaaaggcgatg
gaactgctggtcgaggagcgccacgccaaaggccgcttccagagccttgacgatttcgcc
cgccgcgtggatccgcgcctgctcaacaagcgtcaggtcgaggcgctggcgggggcagga
ggcttcgacagcatcgcgcccgaccggcccggcgtctatgccgccgccgagacgatcctc
gccgtcgcccaacgcactcacgccaaccgcgagagcgggcagggcggcctgttcggcgag
gccgagccggtcggctccgcaatccagctgcccaagagcgcgcgctggacgctgggccag
aagatcgaggccgagaaggattccttcggcttcttcttctccgcgcatccgctcgaccgc
taccagcatcttgcccggctccattcggcgcggaccatcgtcagcctcaacgacatcgac
atcgccgagggcggccgcgccggcgcgaccatcgccgcgctgatcgaggacgcgcgatgg
cggacctcggcgcgtggcaagcgctatctgatggcgacactctccgacgccagcggcacc
gtgccctgcacctgcttcgacgacttcacggcgaaggagatggaggacgcggcgcggatt
ggcggctgcggcatccttacgcttgagctcgatcgccgcgcgggcgaggattcggcccgc
gtcacggtgcgcaaggttcagccgttcgagggaatggcgaaggacgtgcgtctgaccctg
cgcctgaccgtgactgaaccgaccgcgcttgccgccatcgccctccagctcgccgatgcg
cgcggcggtcggtgcgaggtggtgctcgatgcccccctgcccagcggcggcgaggccgag
ctgatactcggccgcaacttccgcatcgatggggagctcgccgctcggatcgagggcctg
cccggcgtcgctgcctgtgagctcaagcccaccgacctgccgaggctggcgttggcgagt
tag
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integrated database retrieval system
