Sphingomonas koreensis: BRX40_17735
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Entry
BRX40_17735 CDS
T04828
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
skr
Sphingomonas koreensis
Pathway
skr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
skr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BRX40_17735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skr03400
]
BRX40_17735
DNA repair and recombination proteins [BR:
skr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BRX40_17735
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BRX40_17735
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
DUF87
AAA_16
Kinesin
AAA_22
Microtub_bd
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
APR54008
UniProt:
A0A1L6JDN8
LinkDB
All DBs
Position
complement(3698746..3700935)
Genome browser
AA seq
729 aa
AA seq
DB search
MTIQIRTSLAEPETGPGFVPHRPARPEKSEGGKAFKLVSEYTPSGDQPTAIRELTEAALA
GERDQVLLGVTGSGKTFTMAKVIEALQRPALILAPNKILAAQLYGEFKSFFPENAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRSLLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQVADQREIIRKLVALQYKRNDAAFARGNFRVRGDSLEIFPSHYEDT
AWRISFFGDDIEEITEFDPLTGAKVANLDHIRVYANSHHVTPGPTLKQAMEAIKHELAER
LKELQAEGKLIEHQRLEQRTHFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
ENALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTV
CVSATPGGWEMDQTGGVFSEQVIRPTGLIDPPVEIKPVEEQVQDLIVECRKTAEKGYRTL
VTTLTKRMAEDLTEYMHEAGIKVRYMHSDVETLERIELIRDLRMGVYDVLIGINLLREGL
DIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVEGRVILYADRITGSMERALNETSR
RREKQEAYNREHGITPTTIKRNIGDIIAHVASKDQVTVEIEDGPAHMVGHNLRAYIEELE
KKMRDAAANLEFEEAGRLRDEIRSLEAEELGLPHDQHRAPVMGRSNEGKPGTRKGRFGKV
QRKWGGGRR
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgacgattcagatccgcaccagccttgccgagcctgagaccggaccgggttttgtaccg
cacagacccgcccgtcccgagaagagcgagggcggcaaggcgttcaagctggtcagcgaa
tacactccctcgggcgaccagccgaccgcgatcagggaactgaccgaagcggcgctggcg
ggggagcgcgatcaggtgctgctcggcgtcaccggttcgggcaagaccttcaccatggcc
aaggtgatcgaggcgttgcagcgccccgcgctgatcctcgcgcccaacaagatcctcgcc
gcgcagctctatggcgaattcaagagcttcttccccgagaatgcggtcgagtatttcgtc
agctattacgactattaccagcccgaggcctatgtgccgcggtcggacacctacatcgag
aaggaaagctcggtgaacgaggcgatcgaccggatgcgccactcggccacccgctcgctg
ctcgaacgcgacgacgtgatcatcgtcgcctcggtctcgtgcctctacggcatcggatcg
gtcgaaacctattcggcgatgatcttcgacctgaaaaagggccaggtcgccgaccagcgt
gagatcatccgcaagctcgtcgcgctccagtacaagcgcaacgacgcggccttcgcgcgc
ggaaatttccgggtgcgcggcgacagcctggagatcttcccgtcgcactatgaggatacc
gcctggcggatcagcttcttcggcgacgatatcgaggagattaccgagttcgacccgctg
accggcgccaaggtcgcgaacctcgatcatatccgcgtctatgcgaactcgcaccacgtc
acgcccgggccgacgctcaaacaagcgatggaggcgatcaagcacgagctggccgagcgg
ctcaaggaactgcaggccgagggcaagctgatcgagcatcagcggctggagcagcgcacc
catttcgacctggagatgatcgccgcgaccggcagttgcgcggggatcgagaattacagc
cgtttcctcaccggccgcctgcccggcgaaccgccgccgacgctgttcgaatatctgccc
gaaaatgcgctgctgttcgtcgacgagagccatcagacggtgccgcagatcggtgcgatg
gcgcgcggcgaccaccggcggaagatcacgctggccgaatatggcttccgcctgccgagc
tgcatcgacaaccgcccgctgcgcttcaacgaatgggatgcgatgcggccgcagacggta
tgcgtatcggcgaccccgggcggatgggagatggaccagaccggcggcgtgttcagcgag
caggtgatccgccccaccggcctgatcgaccctccggtcgagatcaagccggtcgaggag
caggtgcaggacctgatcgtcgagtgccgcaagaccgccgagaaggggtatcgcacgctc
gtcaccacgctgaccaagcgtatggccgaggacctgacggagtatatgcacgaggcgggg
atcaaggtccgctacatgcactcggacgtcgagacgctggagcgtatcgagctgattcgc
gatctgcgcatgggcgtgtacgacgtgctgatcgggatcaatctgctgcgcgaagggctt
gatatccccgagtgcgggctggttgcgatcctcgacgcggacaaggagggtttcctgcga
tcggagacctcgctgatccagacgatcggccgcgccgcgcgcaacgtcgagggtcgcgtg
atcctctatgccgaccgcatcaccggcagcatggagcgcgcgctcaacgagaccagccgc
cgccgcgagaagcaggaagcctataaccgcgagcacggcatcaccccgaccacgatcaag
cgcaacatcggcgacatcatcgcgcatgtcgcgtcgaaggatcaggtgacggtcgagatc
gaggacggccccgcgcacatggtcggccacaatttgcgcgcatatatcgaggagctcgag
aagaagatgcgcgatgctgccgccaacctcgaattcgaggaagccggccgcctgcgcgac
gagatccgctcgctcgaggccgaggaactgggcctgccgcacgaccagcatcgcgcgccg
gtgatgggccgcagcaacgaaggcaagccgggcacgcgcaagggcaggttcggcaaggtg
cagcgcaagtggggcggggggcggcgctga
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integrated database retrieval system
