Salinivibrio kushneri: FCN78_00280
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Entry
FCN78_00280 CDS
T05956
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sks
Salinivibrio kushneri
Pathway
sks03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN78_00280 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sks03019
]
FCN78_00280 (rhlB)
Enzymes [BR:
sks01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FCN78_00280 (rhlB)
Messenger RNA biogenesis [BR:
sks03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCN78_00280 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_22
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QCP00964
LinkDB
All DBs
Position
1:complement(59574..60866)
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AA seq
430 aa
AA seq
DB search
MKMTHITEQKFAELGLHADVLKSLEAKGFTQCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLAATFHHLLTTDAPASRKKNQPRAIILAPTRELAIQIYNDAEPLLANTSISAGLAYG
GEGYDKQQQTLEQGVDILIGTCGRIIDFYKKKVIDLHGIQAVVLDEADRMFDLGFIKDIR
FLFNRMPAPAQRLNMLFSATLSYRVQELAFEHMTNPEHVVVEPEQITGHRIKEELFQPSN
KEKMPLLQTLIEEDWPERAIIFANTKHRCESIWAHLAADNHRVGLLTGDVPQKKRVKILE
QFTNGELDLLVATDVAARGLHIPQVTHVFNYDLPDDAQDYVHRIGRTGRAGASGSSISFA
CEDYAVNLPAIEEYIEHSIPVSEFDRSALLKDLPPPKKMAKRPNTQRRSNNNKGGGNNRN
RQRRRPQKSA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgacgcatatcacagagcagaaatttgccgagctcggcttgcacgccgatgtt
cttaaaagcttggaggccaaagggtttactcaatgtacccctatccaagccttggcattg
ccggtcctgctcaccggccaagacattgcagggcaggcgcaaacagggacaggcaaaacc
ctggcgttcctggctgcgacatttcatcacctccttaccaccgatgcccctgcatcgcgt
aaaaagaatcaaccgcgcgccatcatattagcccctacgcgtgaattagcgattcagatc
tataacgatgctgagccgctgctagccaatacgtcgatcagcgcaggcctcgcctatggt
ggcgaaggttatgacaaacagcaacagacccttgagcaaggcgttgatattttaatcgga
acttgcggtcgaatcattgatttttacaaaaagaaagtgattgatttgcatggcattcaa
gccgtggtcctcgatgaagctgatcgtatgtttgatctcggttttatcaaagacattcgc
tttttgtttaaccgcatgcccgcccccgctcaacgcttgaacatgctgttttcggcgacc
ttgtcgtatcgtgttcaagagctggccttcgagcatatgaccaacccagagcatgtggtg
gtggagccagagcaaattactggccatcgcatcaaagaagagttgttccagccatcaaac
aaagaaaagatgccgctgctgcaaaccttgattgaagaagactggcctgaacgcgcgatc
atttttgccaacaccaagcatcgctgcgagtcaatttgggcccatttagccgccgataac
catcgtgtgggtttgctcaccggggacgttcctcagaaaaaacgggtgaaaatcctcgag
caatttactaatggcgagttggatctgctagtagcgaccgatgtcgcggcgcgcgggctg
catattccgcaagtgacccatgtgtttaattatgatctgccagacgacgcgcaagactat
gtccatcgtattggccgtactgggcgcgcgggtgccagtggcagctccattagctttgcc
tgtgaagactatgcggtaaacctgcccgcgatcgaagagtacatcgaacacagcatcccg
gttagcgagttcgaccgcagtgcactgctaaaagatttgccaccgcctaagaaaatggcg
aagcgtcccaatacgcagcgtcgcagtaacaacaataaagggggcggaaacaaccgtaac
cgccaacgtcgtcgtccacaaaagtcggcataa
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