KEGG   Salinivibrio kushneri: FCN78_00290
Entry
FCN78_00290       CDS       T05956                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sks  Salinivibrio kushneri
Pathway
sks03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sks00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    FCN78_00290 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sks03021]
    FCN78_00290 (rho)
   03019 Messenger RNA biogenesis [BR:sks03019]
    FCN78_00290 (rho)
Transcription machinery [BR:sks03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     FCN78_00290 (rho)
Messenger RNA biogenesis [BR:sks03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     FCN78_00290 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA_22 AAA S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: QCP00966
LinkDB
Position
1:61489..62754
AA seq 421 aa
MNLTELKTQPVSTLVALGESMGLENLARLRKQDIIFSILKQHAKSGEDIFGNGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNQVN
SDKPDNARSKILFENLTPLHASERMVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAFNQPDCELMVLLIDERPEEVTEMQRLVQGEVVASTFDEPANRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDF
TRSGTRREELLTKPDELQKMWILRKIVHPMGELEGMEFLIGKLAMSKTNNEFFDAMRRQN
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaactgaagactcaacccgtctcgacgctggttgcgcttggcgaaagc
atgggacttgaaaacctggctcgcttgcgtaagcaggacatcattttctcgatcctcaaa
cagcacgcaaaaagcggtgaagatattttcggcaatggcgtactggaaattcttcaagac
gggtttggcttcttgcgcagcgcagacagctcgtatttggccggcccagatgacatctat
gtgtcgccaagccaaattcgccgctttaacctgcgcacaggcgataccatcgcgggtaaa
attcgtcccccgaaagacggcgagcgctacttcgcgctattgaaagttaaccaagttaac
agcgacaaaccagacaacgcccgcagtaaaatcctcttcgaaaacttaacgcctttgcac
gccagcgaacgtatggtgatggagcgcggaaacggctctaccgaagacatcactgcccgt
gtactggatttagcttcgccgattggtaaaggccagcgcggcttgattgtggcaccgccc
aaagcgggtaaaaccatgctgctgcaaaacattgcgcaaagcatcgcgtttaaccagcca
gattgtgaattgatggtgctgttgattgacgagcgtccggaagaagtgaccgaaatgcag
cgcctagtacaaggcgaagtggttgcctcaacctttgacgagccggcgaaccgccacgtg
caagtcgccgaaatggtgattgaaaaagccaagcgtttggtggagcacaaaaaagacgtg
gttatcttgctcgactcgatcacgcgtctggcgcgtgcttacaacacggttgtgccatca
tcaggcaaagtattgactggtggtgttgatgccaacgctcttcatcgtcccaagcgtttc
tttggtgcagcgcggaatgtagaagaaggcggcagcctgaccatcattgccacggcgctg
gtagacacgggctcgaagatggatgaagtgatctacgaagagtttaaaggcacgggtaat
atggaactgcacctatcccgtaagattgctgaaaaacgtgttttccctgccattgatttc
acccgctctggtacccgccgtgaagagttactgaccaagcccgatgagctacaaaaaatg
tggattctgcgcaaaatagtgcatccaatgggtgagctggaaggcatggaattcttgatt
ggtaaattggcgatgtccaagaccaataatgagttctttgatgcgatgcgtcggcaaaac
tcgtaa

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