Salinivibrio kushneri: FCN78_03055
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Entry
FCN78_03055 CDS
T05956
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sks
Salinivibrio kushneri
Pathway
sks03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FCN78_03055 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sks03400
]
FCN78_03055 (recB)
Enzymes [BR:
sks01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FCN78_03055 (recB)
DNA repair and recombination proteins [BR:
sks03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FCN78_03055 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
SLFN-g3_helicase
CATASP
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QCP01463
LinkDB
All DBs
Position
1:633147..636734
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AA seq
1195 aa
AA seq
DB search
MEPQILNPLTLPLDGVRLIEASAGTGKTFTIAGLYLRLLLGHGRAAPCRVEQILVVTFTE
AATQELKDRIRRRIHEARFAFMRGESDDPIIGPLLAEICDHKTAAQRLLEAERQIDEAAI
YTIHGFCQRMLTQNAFESGSLFSHEFVTDERQIKARAAADFWRRRFYPLPKSLAGVVSSY
WPAPEALLKEIAPYLSGPAVTVKAPDLGEDLMAAHQAAIAKIDAVKRAWREAGEQINEQL
SAAKLDGRSYRKDHLANWLNAMEQWANAETLDYQLPDKLEKFAQQTLAAKSKAEPPSLAL
FDQIQALVDQPPTLKPGLTALAIKEVRQLLRQEKRRQGWLSFDDLLSQLASALDQDSQDQ
LAARIRSLYPVAMIDEFQDTDPLQYQIFSTVYQPPVADDAPVFADAETEEEGERTGLMII
GDPKQAIYAFRGADIFTYIHARAQVSDHYNLATNWRSTDGMVRGVNALFSRAKAPFVYQD
SIPFLAVASSPSAKQKALVVEGNEQPALTFWHHSPDELCAKQDFEQTLAVSTAQHITQVL
NQSVVGNSYLQTPSGQAEIQPHNIAVLVRTGREAQLVKQALAEKGVASVYLSNRDNVFAS
PVASDIERILVAVMQPENERKLRAALASPLFGLTAEQLALLNQDEALWEQEVVAFSHYRD
TWQRRGVMPMLRQVASARQVAENWLAMPQGERCVTDFLHIAELLQSASQQLDNPHALIRW
LQERMAEPAQQSEEQQVRLESERDLVQIVTIHKSKGLEYDLVYLPFACQYRESSQPFYHD
EQYQPVLALDNVDEGKERAEKERLAEDIRLLYVAVTRAVYGCFIGCAPLKQGNSRQKDSA
LHLTALGYLLQHGEAGDAGLLAESLAGLANASDAVAVVAPPEPDDSLYTPQTGAHEALSA
RQFDGKIDRQWRLTSYSGLLKQSHHVSALPTLASYDLDADDDLADEETPDVAVDPWSVFA
FPKGARAGTFLHTLFEEVDFTADLMSEEVAELITHHLSLENYDPQWCPILQQWMTQVLKH
PLNDQGLRLNHIDNASRLTEMEFVMPLAALDCQRLNRLAARYDALSARAGQLTFDTARGM
LKGFIDLTFRADGKYYVLDWKSNHLGDSVDDYHPEALKEAMIAHRYDFQYQIYTLALHRF
LRQRIPDYDYDTHVGGVFYFFLRGASDSGETGVFAHRPDKALIDALDNLFAGESV
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgcagatcctcaacccgctcaccttgccacttgatggcgtccgattaatcgaa
gcctccgccggcaccggtaagacgtttaccattgctggcttgtacctgcgattgttgctt
gggcatggccgcgcagcgccgtgtcgggtcgagcaaatactggtggtgacgtttaccgaa
gcggcaacccaagagctaaaagaccgtattcgacgtcgcattcatgaggcgcgttttgct
tttatgcgcggggagagtgacgatcctatcattggccctttgctggcagagatttgcgat
cataaaaccgcggcgcagcgactgttagaggccgaacgtcagatcgacgaggcggccatc
tataccattcacggtttttgtcagcggatgctgacccaaaatgcgtttgagtcgggcagc
ctgttcagtcatgaatttgtcaccgacgagcgacagatcaaagcgcgtgcggcggccgac
ttttggcgtcgccgtttttatccgctgcctaaatcgttagccggtgtggtgagcagctac
tggcccgcaccggaggccttattaaaagagattgcgccctatttatccgggccggctgtc
acggtcaaggcgcctgatctcggcgaagatctcatggcggcacaccaagcggcgattgcc
aagattgatgcggtgaagcgcgcatggcgcgaggcgggggagcagatcaacgaacaactc
agcgccgctaaactcgatggccgcagctatcgcaaagatcatttggcgaactggctgaat
gcgatggaacaatgggccaatgccgagacgcttgattaccagttgcccgacaaattggaa
aaattcgcccaacagacgttggcggccaagagtaaagctgagccaccgagcctagcgcta
tttgatcaaattcaggcattggttgatcagccgccgacgttaaaaccgggattgaccgca
ctggcgattaaagaagtgcggcagctgctccgccaagaaaaacgtcgccaagggtggctc
tcgtttgacgatctcctttctcaacttgccagcgcacttgaccaagatagccaagaccag
ttggcggcacgtattcgcagcttatatccggtggcaatgattgatgaattccaagatacc
gacccgctgcaatatcagatttttagcactgtctatcagccaccagtggcggacgatgcc
cctgtattcgcagacgcagagacagaggaagagggtgagcgcaccggcttaatgataatt
ggcgatcctaagcaggcaatttatgcctttcgtggcgccgatatcttcacctatattcat
gcccgtgcacaggtgagtgatcactataaccttgccaccaactggcgctcgacagatggc
atggtgcgcggagtcaatgccttgttctcacgtgcgaaggcaccgtttgtttatcaagac
agtattccctttttagcggtggcctcgtcgcctagcgccaaacaaaaggcgctggtggtg
gagggaaacgagcagcccgcgctcaccttttggcatcacagcccggatgaattgtgtgcc
aagcaagattttgaacagaccttagcggtgagtaccgcacagcatatcacgcaagtgctc
aaccaatcggtggtgggcaatagttatctacagacgccttccggccaagccgaaattcag
ccgcacaatatcgccgtgttggtgcgcaccggacgcgaggcacagctggtcaagcaagcg
ctggccgaaaaaggcgtggcgtctgtgtatctttctaaccgtgataatgtgttcgccagc
cctgtcgccagcgatattgagcgcatcttggtggcggtgatgcagcctgaaaacgagcgt
aagttgcgggcagcgctagccagccccttatttggcctgactgccgagcagctggcgcta
cttaatcaagacgaagccttgtgggagcaagaggtggtggcctttagccattaccgtgat
acttggcagcgccgtggggtgatgccgatgcttcgccaagtcgccagtgcccgccaagtg
gcagaaaactggttggcgatgccgcaaggcgagcgctgtgtgaccgattttttgcatatt
gcggagttgctgcaaagtgccagccagcaattggataacccccacgcgctgatccgctgg
ttacaagagcggatggccgagccggctcaacaatcggaagagcagcaggtacggttggag
tcggagcgtgatttggtgcaaatcgtcaccatccacaaatcgaaaggcttggaatacgat
ctggtttacttgccgtttgcttgtcagtatcgcgaaagcagccaacctttttatcatgat
gaacagtatcagccggtgctggcgctggataatgtcgatgaaggcaaagagcgcgctgaa
aaagagcggctggctgaagatatccgcttgctgtatgtggcggtgacccgtgccgtgtat
gggtgttttatcggctgtgcacctcttaaacaaggtaacagtcggcaaaaagactcggcc
ttgcacttaacggccctcggctatttgcttcagcatggagaggccggtgatgctggcctg
ctggccgagagtttggctggattggcgaacgcgagcgatgcggtggctgtggttgcgcca
ccggagccggacgatagtctttatacccctcaaacgggggcgcacgaggcgctaagcgcg
cgtcagtttgacgggaagattgaccgtcagtggcgcttaaccagttactcagggctgtta
aaacagagccatcatgtcagcgccttgcccacattagccagttacgacttggacgcggac
gatgatctcgctgacgaggagacgccggatgtagcggtggatccttggtcagtttttgcg
tttcccaaaggcgcacgagccggtacctttttacataccttatttgaagaggtggacttt
accgcggatttgatgagtgaagaagtcgctgagcttattacccatcaccttagcttggag
aactatgacccgcagtggtgcccgatattacagcagtggatgacacaggtattgaaacac
ccgcttaatgaccaagggctgaggctgaaccatattgataacgccagtcgattaacggag
atggagttcgtgatgcctttggccgcactcgactgccagcgactcaatcgactcgccgcg
cgatatgatgcgttatcggcgcgtgctggccagctcacctttgacacggcgcgcgggatg
ttaaaaggctttatcgatttaaccttccgcgccgacggcaagtattacgtgctggattgg
aagtcgaaccatttaggggacagtgtggacgattatcatcctgaggcgctcaaagaggcg
atgatcgcgcaccgatacgactttcagtaccagatctataccttggcgctgcaccgcttt
ttgcgccagcggatcccagattatgattacgacacccatgtggggggtgtgttttatttc
tttttacggggcgccagtgatagcggcgagaccggtgtgttcgcgcaccgtcccgataag
gcgctgattgacgccttggacaacctctttgctggagagtcggtatga
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