Salinivibrio kushneri: FCN78_03060
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Entry
FCN78_03060 CDS
T05956
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
sks
Salinivibrio kushneri
Pathway
sks03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FCN78_03060 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sks03400
]
FCN78_03060 (recD)
Enzymes [BR:
sks01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FCN78_03060 (recD)
DNA repair and recombination proteins [BR:
sks03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FCN78_03060 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
NAT10_TcmA_helicase
AAA_11
Viral_helicase1
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
FtsK_SpoIIIE
AAA_28
DEAD
ResIII
CbiA
TrwB_AAD_bind
T2SSE
TraI_hel_assoc_N
MukB
AAA
PIF1
AAA_5
DO-GTPase1
NPHP3_N
UvrD_C
DUF87
Motif
Other DBs
NCBI-ProteinID:
QCP01464
LinkDB
All DBs
Position
1:636731..638569
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AA seq
612 aa
AA seq
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MKQALMALYQRGELRAIDVQFACLMGEEDTQLDKAAITVWAALLSREVGKGHVCLDLHQW
QPPSDVAWQPLLEHIDSQAPSEQLAQASVVSDGTQATPLVLAGHRLYLHRYWHAEQQVAG
HIRQRLTALPVPDEARQTLDNLFAASQAEIDWQKVAAATALTQSFAVISGGPGTGKTTTV
ARLLAALVASHHAERTTSSALTIKLVAPTGKAANRLTESLGRAIAALPVDHDVKAALPTQ
ASTIHRLLGAIPQRVAFRHHKNNPVHADVLIVDEASMVDLPLMAQLFDALAPSTRIILLG
DKDQLASVEAGAVLGDICQYAEAGYPAAQAARLSQLTGFDVPENPHAPAIASALCLLRKS
YRFDAQSGIGQLAFAVNRGEMAEVGAVLKRGYGDITHHVLSDDSYQTLMQQAVTGYRDYL
TTLDNATLENPPSMADVLSAFSQFRLLCALTEGPFGVAGLNQAIEQHLASAGLVAKERDT
WYHGRPIMILQNDHALGLYNGDIGIAVQHAGITRVAFETHDGEVRYLLASRLPAHQTAFA
MTVHKSQGSEFAHTVLVCPPTISPVLTRELIYTGITRAKRQLDLYASWPVLRHGVGARTA
RYSGLPDALIAP
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaagcattaatggcactttaccagcgcggggaattgcgagcgattgatgtgcaa
tttgcttgtttgatgggcgaagaagacacccaattagataaggctgctatcacagtatgg
gcggcgctgctgagtcgcgaagtgggcaaaggccatgtctgccttgatttgcaccagtgg
cagccacccagtgacgtcgcttggcagcctttgctagaacatattgatagccaagcgcca
agcgagcaactggcacaggcgtcggtggtgtctgacgggacgcaggcgacgcccttggtg
cttgcgggacaccgactgtatttgcatcgttactggcatgccgagcagcaagtggcgggg
catattcgccagcgtctgacggcgctgccggtaccggatgaggccagacaaactctagat
aatttatttgccgcctcacaggcagagatagactggcaaaaagtggcggcagccaccgcg
ttgacccagtcttttgcggtgatttcgggtggaccgggtacgggtaaaaccaccaccgtc
gcccgtttgttggcggcgctggtggcgtcacaccatgccgagcgcacaacctcttcagcg
ctcactatcaaactggtcgccccgaccggcaaagcggctaaccgattgactgaatctctg
ggacgggcgattgctgccttgcctgttgatcatgacgtgaaagcggcgctgccgacccaa
gccagcaccattcaccgattattaggggcgattccgcagcgggtggcgtttcgccatcat
aaaaataaccccgtgcatgcggatgtgttgattgtcgatgaagcctcgatggtggacttg
cccttgatggcacaactgttcgatgccttggcgccttcaacacgcattattttgctgggg
gataaagatcagcttgcctctgtggaagcgggggcggtgctaggggatatttgtcagtac
gctgaggcgggctatccagcggcgcaagcggcgcgtttaagccagttaacaggctttgac
gtacccgaaaacccacatgcgccagcgatcgccagtgccctgtgtctgctgcgcaaaagt
tatcgttttgatgctcaatccggcattggccagctcgcctttgcggtgaaccgaggagag
atggccgaggtgggggcggtgttaaaacgcggctatggcgatattacccaccatgtgctg
agtgatgacagttatcagaccctgatgcaacaagcggtgacaggatatcgcgattactta
acaacactcgataatgcgacgctcgaaaacccgccatccatggcggacgtgctgagtgcc
tttagccaatttcgtttgttgtgtgcattgaccgaaggcccatttggtgtcgctggcctc
aaccaagccattgagcagcacttggcgtcggcggggctggtcgctaaagagcgtgatact
tggtatcacggtcggccgatcatgattttgcaaaacgaccatgccctaggattgtataac
ggtgatattgggattgcggtgcaacacgcggggatcacccgggtagcgtttgaaacgcac
gatggagaagtgcgctatttgcttgccagccgtttgcccgcccatcaaaccgcgtttgcg
atgacggtgcataaatcacagggctcggagtttgcgcatacggtgttggtgtgtccgcct
accatttcaccagtgctcacccgcgagctgatttacaccggcatcacgcgggcgaagcgc
cagcttgatctctacgcgtcttggccggtgctgcgccacggtgtaggcgcacgcaccgcc
cgttatagtggtttgccggatgccttgatagcgccttga
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