Salinivibrio kushneri: FCN78_07295
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Entry
FCN78_07295 CDS
T05956
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sks
Salinivibrio kushneri
Pathway
sks03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FCN78_07295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sks03400
]
FCN78_07295
Enzymes [BR:
sks01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FCN78_07295
DNA repair and recombination proteins [BR:
sks03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FCN78_07295
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QCP02216
LinkDB
All DBs
Position
1:1544917..1548381
Genome browser
AA seq
1154 aa
AA seq
DB search
MTQQPLYAFTLPSGPGDVKHLGNLSGAALPLAIATLTQQHAGPVFLLVPDNQTAVRLQPA
IRQFTQGHCDLFPDWETLPYDSFSPHQDIISARLSCLYQLPHQQDGVLIAPASTALQRVT
PRHFLHQHALMVKKGDILSLEKLRDQLTDAGYRHVDQVMEHGEFASRGSILDLFPMGSDE
PYRIDFFDDEVDTIRQFDPENQRSTGELEHIQLLPAHEFPTDDAAVEYFRGRFREHFEAR
REPESIYQQVSKKTWPAGIEYWLPLFFEQTETLFDYLPDNTLVLSVGDMESAIDHFQADV
ANRYDQRRVDPLRPLLPPDALWLSKESLFTTLKHYPRLKLESDTVTEKTGRENLDITSLP
TLTVNHQAKEPLAALRQFSEQFDGDIIFSVESEGRREALLDLLAQAKIRPMVANGLPEAL
SQPGRFGLIIGPVDQGFIDNSRQFALICESDMFGERAVQQRRRDKRKQSVSTDAVIRSLA
ELKPGQPVVHLEHGIGRYQGLQTLEAGGLKTEYMTLEYQQGAKLYVPVGALHLISRYSGG
AEESAPVHKLGGEAWEKARRRAAEKVRDVAAELLDVYAKRETKPGFAFSHDKDAYRAFRA
TFPFEETSDQSQAINAVLSDMCRPIAMDRLVCGDVGFGKTEVAMRAAFLAVNNSKQVAVL
VPTTLLAQQHFENFRDRFANLPVRVEVLSRFKSAKEQKAILADCEAGKVDILIGTHKLLQ
SDVKLRDLGLLIVDEEHRFGVRQKEKIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI
IATPPSRRLAVKTFVREREDSLIKESLLREIMRGGQVYFLHNDIETIEKTANEISEMIPE
ARVTVAHGQMRERELEKIMSDFYHQRYNVLVCTTIIETGIDIPSANTIIIDRADHFGLAQ
LHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKRLDAIASLEDLGAGFTLATQDLEIRGA
GELLGDEQSGQIQSVGFTLYMDMLEQAVEALKEGKEPSLDVLLNEQTDIELRLPALLPDD
YIPDINMRLSMYKRIASAKSNDDINELQVELIDRFGLLPDATKNLLHIQQLKIRAAALGV
KKIEASDRGGMVEFHEDAQIDPGFLVGLLQSRPDKYKFDGPTKIKFIESLTDRRERMNFI
DELLTQFASHQLVA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgacccaacaaccgctctatgcttttacgctgccctcagggccaggcgatgttaaacat
ctcggtaatctatcaggggctgcattaccgctagccattgccacgctcacgcagcaacac
gccggcccggtgtttcttttggtgcccgacaaccaaaccgccgtgcgtttgcagcccgcc
attcgccaatttactcaaggccattgcgacctctttcctgactgggaaaccctgccctac
gacagtttctccccccatcaggatattatttccgcgcgtttgtcgtgcttgtatcagctc
cctcatcaacaagacggggtactcattgcgccagcgagcaccgcattacagcgcgtgaca
ccgcgacattttctccatcaacatgccttaatggtgaaaaaaggcgatatcttatcgcta
gaaaaactgcgcgatcagctcaccgatgcgggctaccgtcatgttgatcaagtgatggag
catggcgagtttgccagccgaggttcgatcctcgacctgttcccaatgggcagtgacgaa
ccttatcgtattgattttttcgacgatgaagtcgacaccattcgtcaatttgacccggaa
aaccaacgctcaaccggagagctggaacacatccagctgttgccggcgcatgaattcccc
accgatgacgccgcggtggagtactttcgtggccggtttcgcgagcattttgaagcgcgc
cgagagccagaatccatttaccagcaggtaagtaaaaaaacctggccggccgggattgaa
tactggctgccgctgttttttgaacaaacagaaaccttgtttgattatttgcctgacaat
acattggtgttatcggtcggcgatatggaaagcgctattgatcatttccaagccgatgtg
gcaaaccgttatgatcagcgtcgcgtcgatccgcttcgaccgctgctcccccccgatgcg
ctctggttaagcaaagagtccctgtttactacgcttaagcactacccacgcttaaagcta
gaaagtgacactgtcactgaaaaaacaggacgagaaaacctcgatattacgtcgctacca
acgttgacggtcaatcatcaagccaaagagccccttgcggcgctgcgccagttcagcgag
caatttgacggcgacatcattttctcagttgagtctgaagggcgacgcgaagcgctactc
gatctcctcgcccaagccaaaatccgcccgatggtagctaatggcctgcccgaagccttg
tcgcaacccggtcgatttggcctaatcattgggcccgttgaccaaggctttattgacaac
agccgccagtttgcgctgatttgtgaaagcgatatgtttggcgagcgcgcggtacagcaa
cgccgccgcgacaaacgaaagcagagtgtcagtacagatgcggtgatcagaagcttggcc
gaactaaaacctggccaacccgttgtacatctcgagcatggtattggacgctaccaaggc
ttacaaaccctggaagctggcgggctcaaaaccgaatatatgacgctggaataccaacag
ggcgctaagttatatgtgccggtgggcgcactacacttgattagccgctactctggtggc
gcggaagaaagcgcgcctgtgcataaacttggcggcgaggcgtgggaaaaagcacgccgc
cgcgccgcagaaaaggtgcgcgatgtcgccgccgagctgcttgatgtttatgccaagcga
gaaaccaaacctggctttgcctttagccatgacaaagacgcctatcgcgccttccgggcg
actttcccgtttgaagaaaccagtgatcaatcacaagctatcaacgcggtgctgtcggat
atgtgtcgtcccattgccatggatcgcttggtgtgtggcgatgttggctttggtaaaacc
gaagtggccatgcgtgccgccttcttggcggttaataacagcaagcaagttgccgtatta
gtccccaccaccctgctggcgcaacagcatttcgagaatttccgtgaccgcttcgctaac
cttcctgtccgtgtggaggtgttgtcacgctttaagtcagcaaaagagcaaaaagcgatt
ttggccgattgtgaagcgggtaaagtggacattctcatcggcacccataagttactgcaa
tcggatgtgaagctgcgcgacctcggtttattgattgttgatgaggagcaccgctttggg
gttcgccagaaagagaaaattaaggcgatgcgcgccaatgtggatattctcaccttaacc
gccacgccgatccccagaacactgaatatggcgatgagcggcatgcgcgatctttcgatt
atcgccaccccaccgtcgcgccgcctcgcggtgaaaacctttgtccgtgaacgcgaagac
agcctgattaaagagtcacttctgcgtgaaatcatgcgcggtggccaagtgtacttttta
cacaatgacatcgaaaccatagaaaaaacggccaatgaaatcagtgaaatgatcccagaa
gctcgcgtgaccgtggcccatggccaaatgcgcgaacgtgagctagaaaagatcatgagc
gatttctaccatcaacgatacaacgtgctggtatgtaccaccattatcgaaaccggtatc
gatattccctcagccaacaccattattattgatcgcgccgaccactttggtcttgcgcaa
ctccaccagctgcgcggtcgagtgggtcgttcgcaccatcaagcctatgcgtatctgttg
accccccatcctaaacggatgaccaaagatgcggcaaaacggctggacgccattgcctcg
ctcgaagatctcggtgccggctttacccttgcgactcaagacttggagatacgcggcgcc
ggcgagctactcggtgacgagcaaagtggtcaaatccaatcggttggtttcaccctatac
atggacatgcttgagcaggccgtcgaggcattgaaagaaggaaaagagccgagcttagat
gtattgctgaatgaacaaaccgacattgagctacgcctgcctgcgctgttaccagatgac
tacattcccgatatcaatatgcgtttatcgatgtataaacgcattgccagcgccaagtcc
aatgatgatatcaatgagctgcaagttgagctaatagaccgctttggcctgctgcctgac
gctaccaagaatctgcttcatatccagcaattaaaaatacgtgctgccgcattaggggtg
aaaaagatcgaagccagtgatcgtggcggcatggtcgagtttcacgaggacgcgcaaatt
gatcccggattcttggtcgggctgttacaatcgcggccagacaagtataaatttgacggg
ccaaccaaaattaagtttatcgaaagtctcaccgatcgacgggagcggatgaactttatt
gatgagctgttgactcaatttgcaagtcaccaactggtcgcataa
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