Salinivibrio kushneri: FCN78_07305
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Entry
FCN78_07305 CDS
T05956
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sks
Salinivibrio kushneri
Pathway
sks03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN78_07305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sks03019
]
FCN78_07305
Enzymes [BR:
sks01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FCN78_07305
Messenger RNA biogenesis [BR:
sks03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCN78_07305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
UvrD-helicase
P-loop_SecA
AAA_22
AAA_25
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QCP02217
LinkDB
All DBs
Position
1:complement(1549405..1550736)
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AA seq
443 aa
AA seq
DB search
MSFSSLGLSAPLLKAVQEQGYTTPSPIQEKAIPAVIEGQDVMAAAQTGTGKTAGFTLPIL
ERLQAGKRARPNHVRTLILTPTRELAAQVHKNVEQYSQHTSLSSMVVFGGVKINPQMMKL
RKGADVLVATPGRLLDLYQQNAVRFSQLEVLVLDEADRMLDMGFIRDIRKILGLLPAKRQ
NLLFSATFSADIRQLAKELVNNPVEISVSPANQTATGVEQCIYPVDKKKKPAMLLSLIAD
NNWQQVLVFSKTKHGANRLSRYLDEYGVSAAAIHGNKSQGARTKALEQFKTGDVRVLVAT
DIAARGIDIAQLPQVVNFDLPHVAEDYVHRIGRTGRAGAVGNAVSLVCADEAKDLFAIER
LIKKVLPRHSLADFPVANPVPESKLDTRPIKPKKPKKNKPRQDGQRSGDNARGHKPVGKN
RRHTHKPSGGKPNSSRSQSKTPS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgagtttctcctctttaggactatctgcacccctattaaaagccgtacaagagcaaggc
tataccacaccctcaccgattcaggaaaaagcgattccagcggtgattgaagggcaagac
gtgatggcggccgcgcaaaccggcacgggcaaaaccgcaggctttactttgccgatttta
gagcgtttacaagcaggtaaacgcgcgcgtcctaaccacgtgcgcaccctgattctgact
ccaacgcgtgagcttgccgcccaagtacataaaaatgttgagcagtacagccagcataca
tcgctgagctctatggtggtatttggcggggtgaagataaacccgcaaatgatgaagctt
cgcaaaggggctgatgtgctggtggcgacgccggggcgtttattggatttgtatcagcaa
aatgcggtgcgtttttctcagctggaagtgctggtattggatgaagctgatcgcatgcta
gacatggggtttattcgtgatatccgcaagatcttgggattgttgccagccaagcgtcaa
aacttgctgttctctgccaccttctcggctgacatccgccagctagcgaaagagctggtg
aataatccggttgagatctcggtgagccctgcgaaccaaaccgcgacaggggtggagcag
tgcatttatccggttgataaaaagaaaaagcccgcgatgctgctttctttgattgctgac
aataactggcaacaggtgttggtgtttagcaaaaccaagcacggtgccaaccgcttgtca
cgttatttggatgagtacggcgtcagtgccgccgccattcatggtaacaagagccaaggc
gcgcgcaccaaagcacttgaacaattcaaaaccggtgacgtgcgagtgttggtagcaacc
gatatcgcggcgcggggtattgatattgcccaactgccacaagtggtgaacttcgattta
cctcatgtggcggaagattatgttcaccgtattggtcgtaccggtcgtgcgggggcggtg
ggtaatgcggtctctttagtttgtgcggatgaagccaaagatttgtttgccattgagcgc
ttgattaaaaaggtcctcccgcgccatagcttggcggactttccggtggcgaacccagtg
ccagagtctaagcttgatacgcgcccaattaagcccaagaaaccgaaaaagaacaaaccg
cgtcaggatggtcaacgctctggtgacaatgcacgtggtcacaaaccggtgggaaaaaac
cgtcgccatacccacaaaccaagtggcggtaagcccaactcatctcgttcacagagtaaa
acgccatcataa
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