Salinivibrio kushneri: FCN78_08295
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Entry
FCN78_08295 CDS
T05956
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sks
Salinivibrio kushneri
Pathway
sks03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN78_08295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sks03019
]
FCN78_08295
03009 Ribosome biogenesis [BR:
sks03009
]
FCN78_08295
Enzymes [BR:
sks01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FCN78_08295
Messenger RNA biogenesis [BR:
sks03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FCN78_08295
Ribosome biogenesis [BR:
sks03009
]
Prokaryotic type
rRNA processing factors
FCN78_08295
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QCP03332
LinkDB
All DBs
Position
1:1749718..1752666
Genome browser
AA seq
982 aa
AA seq
DB search
MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPSGYTYQGRPNIKDVVKEGQEVIVQVDKEERGNKGAALTTFVSLA
GSYLVLMPNNPRAGGISRRIEGEERSQLKEAMSGLELPQGMGLIVRTAGVGKSAEELEWD
LKVLLNHWQAVKEAANANPAPFLIHQESNVIARAIRDYLRRDIGEILIDSEKVFQRAQEH
IKLVRPDFVSRIKFYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGSDIEETARQTNIEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENKLR
DSVRMDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCKGTGVIRDNESLSLSIL
RLMEEEAMKENTAQVLGIVPVPVASYLLNEKRRSVQHIEKYHNVKVVVVPNADMQTPHFD
VVRVRGGEEMANLSYQLPSQIDALKEVEAREEPQQARPAKKREEPVLQGFAAPSSPAPSA
TKAAAPTDEPTATTQPGLFAKVSQFFSRLFAAPADDAATASSSQPAAQPEPAQTEQSQKP
SHSQRNKSRSHNKPQNRDEQSDSNNGERGRNNKQRRQNKPQEERRDNNRKGKKTRNDNRN
DKAKKPAAQEDAKATKPQADKADKSNKQPDQKTEKTEQVKQRRQRRKLNRSVRINKDNAD
SQVAAEVTPDQGKDLQQVGAEVAQQAKQQPDNAKKEGQQDKRRNRRSPRHLRASGQRRRR
RPMVKSPMPLTTGMASPEMAMGKVWSAEQPVKVKQDRRRQDKRQNSKAIVSGVARPEMAM
GKVIIMQAKSEETESVSTQPMASTSASEPAPQPAQSQATPVVDAMPNVAMTDAPTATPEQ
DSEVDLVTEKVIEREAEINAPTATIQYRRATSPMMKAPAPNEPVDHSPVAIATFKAPNPA
AKAAGSAEARASAYAPATKPQY
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgttgattaacgcaactcagaaagaagagttgcgcgtcgcattggtcgacggtcaacgg
ctatacgacctcgatatcgagagtcctggccatgagtcaaaaaaagcgaatatctacaaa
ggacgcattacccgtatcgaacctagcctggaagcggcatttgttgattacggcgccgaa
agacacggttttctccctctaaaagaaatcgctcgcgaatacttcccttccggttatacc
tatcaaggccgcccaaacatcaaagatgtggtgaaagaaggccaggaagtgattgtccaa
gtagacaaagaagagcgcggcaataaaggggccgccctgacaacgtttgtgtcgcttgcg
gggagctatttggtattaatgccaaacaacccacgtgctggcgggatttctcgtcgcatt
gagggagaagagcgcagccagcttaaagaagccatgtctggcctcgaactgccgcaaggg
atgggcttgattgtacgcaccgcaggtgtgggtaaatcggccgaagagcttgagtgggac
ttgaaagtgctgctcaatcattggcaagcggtgaaagaggcagctaacgccaaccctgcg
cctttccttatccatcaagaaagtaacgtgattgcccgtgcgatccgtgactatttgcgc
cgtgatatcggtgagatcttgattgacagtgagaaggtcttccaacgcgcgcaagagcac
atcaagctggttcgtcctgactttgtcagccgcatcaagttttatgaaggtgaagtgccg
ctatttagccactatcagattgaaagtcagatcgaatctgccttccaacgcgaagtgcgc
ttaccctcaggtggctcgattgtcattgacccaaccgaagccctgacctcaatcgatatc
aactctgcccgagccaccaaaggcagtgatattgaagagacggcgcggcaaaccaacatc
gaagcagcagaagaaattgcccgccaattgcgtctgcgtgacttaggtggcttggtcgtg
atcgacttcatcgatatgacgcctgtccgccaccaacgcgaggtggagaacaaattgcgt
gactctgtccgcatggaccgtgcacgggtacaaatcggccgtatttcacgctttggtttg
ctggaaatgtcacgtcagcgcctcagcccgtcattggcagaagccagtcatcatatttgc
ccgcgttgtaaaggcaccggtgtgattcgtgacaacgagtcactgtcattgtcgattctt
cgtctgatggaagaagaagcaatgaaagaaaatacggcgcaagtattgggtatcgtcccg
gtccccgtcgcttcttacctgcttaacgaaaagcgccgctcggtccagcacattgagaaa
taccacaatgtcaaagtggtcgtggtacccaatgccgacatgcagacgccacactttgat
gtggttcgcgtccgcggcggtgaagaaatggcgaacctgtcctatcagttgcctagccag
attgatgcgctcaaggaagtagaagcccgcgaagagccacaacaagcgcgtccagcgaaa
aaacgtgaagagcctgtattacagggatttgcggcgccaagctcgccagcacccagtgca
accaaagcggctgcgccaaccgatgagccaacagcgacaacccagccaggcctgttcgcc
aaagtgagtcagttcttctcgcgcttgtttgccgcgcccgctgatgatgcagcaaccgct
tcatcgtcacagcctgccgcccaacctgagccagctcagacagagcaaagccagaagcca
tcacacagccagcgcaataagtcacgtagccataacaagccacaaaaccgcgacgagcaa
agtgatagcaacaacggtgaacgtggacggaataacaaacaacgccgccagaataagccg
caagaagaacgtcgcgataataatcgtaaagggaagaaaacccgtaacgataaccgcaac
gacaaagcgaaaaagcctgcggcgcaggaagacgctaaggcaaccaagccacaggctgac
aaagcggataaaagtaataagcaacccgatcaaaagacagagaagaccgaacaggttaaa
caacgccgtcaacgtcgtaagctaaatcgcagtgtccgtatcaacaaagacaatgcggat
agccaagtggcggccgaggtaacacctgaccaaggtaaagacttgcagcaagtcggggca
gaagtggcgcagcaagccaaacagcagcctgataatgccaagaaagaaggtcagcaggac
aagcgccgtaaccgtcgctcaccgcgccaccttcgcgccagtgggcagcgtcgtcgtcgc
cgtccaatggtgaaaagtccaatgccgctgactaccggtatggcgtcacccgaaatggcg
atgggcaaggtgtggtcggcagagcagccggtgaaagtcaaacaagaccgtcgccgccaa
gacaagcgccaaaacagtaaggctatcgtcagtggtgttgcccgtccagaaatggccatg
ggtaaagtcattatcatgcaagctaaatcggaggagacagagtcagtgtcgacccaaccg
atggcttcgacaagtgcctctgaaccagcgccacaaccggcacaaagccaagcaacaccg
gtggtcgatgcgatgccaaatgtcgcgatgacagacgcgccaacggcaacccctgagcaa
gactcagaggtcgatttggtgaccgagaaagtgattgagcgcgaagcggaaatcaatgcc
ccgacggcaacgattcaataccgccgagcgacatcaccgatgatgaaagcaccggcaccg
aacgaaccagttgatcacagcccggtggccatcgctacctttaaagcgcctaacccagca
gcgaaagcagcaggtagcgccgaggcacgtgcatctgcctacgcaccggcgaccaaacct
cagtactaa
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