Salinivibrio kushneri: FCN78_11390
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Entry
FCN78_11390 CDS
T05956
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sks
Salinivibrio kushneri
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sks03021
]
FCN78_11390 (rapA)
Transcription machinery [BR:
sks03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
FCN78_11390 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCP02942
LinkDB
All DBs
Position
1:2471775..2474684
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AA seq
969 aa
AA seq
DB search
MSFALGQRWISDTEHDLGLGTVVSVDGRTVTLMFPASDETRLYASHDAPVTRVMFNPGDE
VESHEGWTMTVSRIEENDGVLTYYGQRTDTGEDEVALREILLSHQIRFNKPQDKLFAGQL
DRMDRFALRYRALTNQHQQLRSPLRGLTGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLAGRAERVLIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFA
DAPNPFDTQQLVLCSLEFLRKNRRRVEQVCDTHWDLLVVDEAHHLTWAPDAPSREYQIIE
SIAEHTPGVLLLTATPEQLGQQSHFARLRLLDPDRFYDYDAFVEEAQQYAPVAEAVEALL
DDTPLTDAAQAGIRQLLQHEDLSARLAQVHSDDAEENARARQQLIDDLMDRHGTGRVLFR
NTRAAISGFPSRRLHMQPLALPSQYQTAMRVAGMMGSTGSSEQKAVQNLYPEDIYQQFEG
DSASWWGFDPRIDWLLDYLKAHRSEKVLIICSRAQTALTLEQALREREGIRGTVFHEGMS
IVERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFAHQLVMFDLPMNPDLLEQRIGRLDR
IGQTQDIAIHVPYLEGTAQTILARWYHEGLDAFEDTCPTGRAVFEQYGETLLTLLAANQQ
DDALSALISDSAVMNQRLKAEMEEGRDKLLEMHSHGGEAANQLANTIAEQDGDTNLVTFT
LGLFDTIGVNQDDKGENALVVKPSEHMMVPSYPGLPADGCTITFDRDTALSREDVQFVSW
EHPIVRGGIDLLLSENIGTTAVSLLKNKSLPVGTLFVELIYTIDAQAPKSSGIHRFLPQT
PVRLLLDANGNDLSTNVEFESFHRQLSPVNRHLGSKMVNSVQSQIHNLIEKSEPLAEKAL
GEVQTRAHQEMETELQQALARLEALKTVNPNIRDDELDALREQISTLSHHIQHAQIELDA
LRLVVVSHQ
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgcgcttggacaacgttggatcagtgatacggagcatgatcttggactcggc
accgtggtgtccgttgatggccgtaccgtgaccctaatgtttcctgctagtgatgaaaca
cggctgtacgccagccatgatgcgcccgtgactcgggtgatgttcaaccccggcgatgag
gtagaaagtcacgagggctggaccatgaccgtctcgcgcattgaagaaaacgacggggtg
ttgacctattacggccagcgtaccgacacaggggaagatgaggtcgcactgcgtgagatc
ttactcagccaccaaattcgcttcaacaagccacaagacaaactgtttgctggccagctc
gatcgtatggaccgttttgccctgcgttatcgcgcgctgaccaatcagcaccagcaactg
cgtagcccattacgcggtttaaccggcatgcgtgctggcctgatcccccatcagctttac
attgcccatgaagtcggtcgtcgtcatgcaccgcgcgtactgctcgccgatgaagtgggg
ttggggaaaaccattgaggcagggatgatcatccaccagcaagtgctagcgggtcgcgcg
gaacgtgtactgattgtggtgcccgaaaccttacagcatcagtggctggtggagatgatg
cgccgctttaatctgcatttctcgattttcgatgaagagcgctgtgtggaggctttcgcc
gacgcccccaacccctttgatacccaacaattggtgttgtgctcactggagtttctgcgc
aaaaaccgccgccgggtggaacaagtgtgtgatacccattgggatttattggtggtcgac
gaagcccatcacctcacgtgggcacccgatgcgccgagccgcgaatatcaaattattgaa
agcatcgctgagcacacccctggcgtattgctgctcaccgcgacaccagagcaattgggc
cagcaaagccattttgcccgcttgcgcctgctcgaccccgatcgcttctatgattacgac
gcctttgttgaagaagcccaacaatacgcgcccgtggctgaggcggtggaagcgctgctg
gacgatacgccactgaccgacgcggcacaagctgggatacgtcagctattgcaacacgaa
gatctgtcagcacgtttggcccaagtgcacagtgatgacgcagaagaaaacgcccgggcg
cgccaacagctgattgatgatttgatggaccgccatggcactggacgcgtcttgttccgt
aacacccgagcggccattagcggcttccccagccgccgcctgcatatgcagccactggcg
ctacccagtcaataccaaaccgccatgcgggtcgccggcatgatgggcagcacaggttcg
agtgaacaaaaggcagtgcaaaacctatacccagaagatatctatcaacagtttgaaggg
gatagcgcgagctggtggggctttgatccacgtattgattggctgttggattacttaaaa
gcccaccgcagcgagaaggtgctgattatttgctcgcgggcgcaaaccgcactgacccta
gagcaagcgctgcgtgagcgcgaaggtattcgcggaactgtattccatgaagggatgtcg
attgttgagcgtgacaaagccgcggcttactttgcccaagaagaggggggcgcgcaggtc
ttgatctgctcagaaattggctcggaagggcgcaacttccaattcgcccatcagctagtg
atgttcgacttaccgatgaaccccgatttacttgagcagcgtatcggccgtcttgaccgt
attggccagacgcaagatattgccattcatgtcccgtatcttgaaggcaccgctcagacc
attttagcgcgctggtatcacgaaggcttagacgcgtttgaagatacctgccccaccggc
cgcgcggtgtttgagcaatatggcgagaccttgttaacgctgctcgcggccaatcaacag
gatgacgcgctgtcggcgctgatcagtgacagtgcagtaatgaatcagcgcttaaaagca
gaaatggaagaaggccgagataagctcctcgaaatgcactctcacggtggggaagccgct
aaccaactggcaaacaccattgccgagcaggatggcgacactaacttggtcactttcacc
ttggggctgtttgataccatcggagttaaccaagatgacaaaggcgagaatgccttggtg
gtcaaaccgtctgaacacatgatggtacccagctatccaggactgcctgccgatggctgc
accattacctttgaccgcgataccgcattgagtcgcgaagatgttcagtttgtatcttgg
gagcacccgattgttcgagggggcattgatttgctgctgagcgaaaacatcggcactacc
gcggtatcactgctcaaaaacaagtcactgccggtaggcacgctgtttgtcgagcttatc
tacaccattgacgcccaggcgccgaaatcgagcggtatccaccgctttttaccgcaaacg
cccgtgcgattgctgcttgatgccaacggcaatgatctgtccaccaatgtcgaatttgaa
agcttccatcgccagctcagtccggtaaatcgccacctcggtagtaaaatggttaactcg
gtacaaagccagatccacaacctgattgagaaaagcgaaccactggcagagaaagccctc
ggcgaggtccaaacccgggcgcaccaagaaatggaaaccgagctccaacaagccttagcg
cgtttagaagcactcaaaacggtcaatccgaatattcgtgatgatgagctagacgcatta
cgcgagcagataagcaccttgtcgcaccatattcagcacgctcaaattgagcttgatgcg
ctgcgccttgttgtagttagccaccaataa
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