Salinivibrio kushneri: FCN78_12590
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Entry
FCN78_12590 CDS
T05956
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sks
Salinivibrio kushneri
Pathway
sks03030
DNA replication
sks03410
Base excision repair
sks03420
Nucleotide excision repair
sks03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FCN78_12590 (polA)
03410 Base excision repair
FCN78_12590 (polA)
03420 Nucleotide excision repair
FCN78_12590 (polA)
03440 Homologous recombination
FCN78_12590 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sks03032
]
FCN78_12590 (polA)
03400 DNA repair and recombination proteins [BR:
sks03400
]
FCN78_12590 (polA)
Enzymes [BR:
sks01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FCN78_12590 (polA)
DNA replication proteins [BR:
sks03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FCN78_12590 (polA)
DNA repair and recombination proteins [BR:
sks03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
FCN78_12590 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FCN78_12590 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
DUF5997
Prok-E2_E
Motif
Other DBs
NCBI-ProteinID:
QCP03150
LinkDB
All DBs
Position
1:complement(2738374..2741124)
Genome browser
AA seq
916 aa
AA seq
DB search
MATLPDNPLILVDGSSYLYRAYHASPNLTNSQGEPTGAVFGVVNMLRSLLRQYPHSHVAV
IFDAKGKTFRDDMYEQYKANRPPMPDDLRGQIEPLHKIIKAMGLPLLAVEGVEADDVIGT
LATQASQAGMPVLISTGDKDMAQLVDEHVTLINTMTNVVMDPEAVREKYGFGPEHMIDYL
ALMGDKVDNIPGVPGVGDKTATALIANLGGLDDIYANLERIADLGFRGAKSMAKKLTEHK
ESAYLSHQLATIKLDVELDFTPEQLVKQEPDNDTLVAMYRDLQFRRWLKELDEGDAPEEA
VSDEPISQAATIDRSGYQTVLTRDALDSWLEKIREAEVVAVDTETDSLNYMEANLVGISF
AVAPGEAAYVPVAHDYLEAPAQLSLDQVLDVLRPWLEDPSAAKVGQNLKYDASVFARHGI
TLKGIAYDTMLESYVYNSVAGRHDMDSLAERYLQHTCISFEEIAGKGKKQLTFNQIPLEQ
AAPYAAEDADITLRLHQYLIGKVTSDEKLKTIFECYEMPLVSVLSRMERHGVLIDKDKLA
TQSEALHTRLIELEREAFEIAGEEFNLSSPKQLQAILFEKMGLPVVKKTPSGSPSTNEEV
LQELSLDYPLPARILEYRGLAKLKSTYTDKLPRMINAQTGRVHTSYHQAVTATGRLSSTD
PNLQNIPIRNEQGRRIREAFTADADNTILAVDYSQIELRIMAHLSGDKALLEAFREGKDI
HAATAAEVMGIRLDEVTSEQRRRAKAINFGLIYGMSAFGLSRQLGIGRHEAQSYMDTYFE
RYPGVKAYMDRTREQAAEKGYVETIFGRRLYLPEIKSRNGMRRKGAERAAINAPMQGTAA
DIIKRAMILVDQWIQANAADEARLVMQVHDELVLEVKTSSMSKVESKVRKLMASAADLDV
PLIAEAGFGDNWGEAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcttcccgacaatccgttaatccttgtggatggctcttcgtatctttaccgg
gcataccatgcgtcccccaatctcactaatagccaaggcgagcccacgggcgcggtattt
ggggtggtcaatatgctgcgcagcttgttgcgacagtatccacattcacacgtggcggtg
atttttgatgccaaagggaagacgttccgcgatgacatgtatgaacaatacaaagccaac
cgtccaccgatgccagatgatctacgcgggcaaattgaacctttgcacaagattatcaaa
gccatgggtttgcctttactcgcggtagaaggggtggaagccgatgatgtgattggcacg
ctcgccacgcaagcctcacaagcggggatgccggtgcttatcagtacgggtgacaaagat
atggcgcagctggtggatgagcatgtcaccttaatcaacaccatgaccaatgtggtgatg
gatcctgaggcggtgcgtgagaagtatggctttggtcctgagcatatgattgattacctt
gctctgatgggcgacaaagtcgataacattcccggtgtacctggggtcggtgataaaacc
gcgaccgcgttgattgccaatctgggcggcttggatgatatttacgccaaccttgagcgt
atcgccgaccttggtttccgtggtgcgaagagcatggcgaagaaactgacagagcataaa
gagtcggcttatttgtcacaccagttagcaacgataaaattggacgttgaactggacttc
acccctgaacagctcgtcaagcaagagcctgataatgacaccttggtggccatgtatcgt
gacttgcaattccgccgctggctcaaagagctggatgaaggtgatgcgccagaagaggcg
gtgtctgatgaacctatctcgcaagcggccacgattgaccgcagtggttatcagaccgtt
ctgacacgcgacgcgctggatagttggcttgaaaaaatccgtgaggctgaggtggtcgcg
gtggatacggaaaccgatagcctcaactatatggaagccaatctggttgggatttcattt
gccgtcgcgccgggtgaagcggcgtatgtgccggtagctcatgattacctggaagcgcct
gcgcagttatcgctggatcaggtgctggacgtattacgcccttggttggaagatccttca
gcggcgaaagtcggtcaaaatctgaaatatgatgccagtgtgtttgcgcgtcacgggatc
accttaaaagggatcgcctatgacaccatgctggagtcgtacgtctataacagtgtggcg
ggacgtcatgacatggatagcctcgctgagcgctacttgcagcatacctgcatcagcttt
gaagagattgccgggaaaggcaagaaacaactgacttttaaccaaatcccgcttgagcaa
gcggcaccttatgcggcggaagatgcggacattacgttgcgtttgcaccaatacctgatt
gggaaagtcaccagtgacgagaaactaaaaaccatttttgagtgctacgagatgccgctg
gtcagcgtgctgtcgcgcatggaacgtcatggggtgctaatcgacaaagacaagctggcg
acccaatcagaggcgctacatactcgtttgattgagcttgagcgtgaagcctttgagatt
gccggcgaagagttcaacttaagctcgcccaagcaactacaagcgattttgtttgagaaa
atgggcctgccggtggtgaagaaaaccccatcagggagcccttcaaccaatgaggaagtg
ctgcaagagctctcactcgattacccgctacctgcgcggattttggaataccgtggactg
gcaaaactcaaatcgacgtacacggacaaattgccgcgcatgattaatgcgcaaacgggc
cgcgtgcatacctcgtatcatcaagccgtcactgcgacggggcgcttatcgtccaccgat
ccgaacttacaaaatatccccattcgtaacgagcaggggcgtcgtattcgcgaggccttt
acggcagacgcggataacaccattttggcggtggattactcgcaaatcgaattgcggatt
atggcgcatttatctggtgataaagccttgctagaagcgttccgagagggcaaagatatt
cacgccgccaccgcagccgaagtgatgggtatccgcctcgatgaagtcaccagtgaacag
cgtcgccgcgccaaagcgatcaactttggcctgatttatggcatgagtgccttcggctta
tctcgtcaattagggattggtcgccatgaagcacaaagttacatggatacttattttgag
cgttatccaggcgtgaaggcctacatggaccgcacccgtgagcaagcggcggaaaaaggc
tacgtggaaaccatttttggtcgtcgcctttatctgcctgaaataaaatcacgaaacggc
atgcgtcgtaaaggggccgagcgcgcggcaatcaatgcgccgatgcaagggacggcagcc
gatattatcaagcgtgcgatgatactggttgatcaatggatccaagccaacgccgcggat
gaggctcgcctggtgatgcaggtgcacgatgaactggtgttggaagtcaaaacgtcatca
atgtccaaagttgaaagcaaagtacggaaattgatggcgtcagcggctgacttggatgtg
cctttgatcgccgaagcagggttcggcgataactggggagaagcccactaa
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