Salinivibrio kushneri: FCN78_14345
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Entry
FCN78_14345 CDS
T05956
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sks
Salinivibrio kushneri
Pathway
sks03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN78_14345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sks03019
]
FCN78_14345
03400 DNA repair and recombination proteins [BR:
sks03400
]
FCN78_14345
Enzymes [BR:
sks01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FCN78_14345
Messenger RNA biogenesis [BR:
sks03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCN78_14345
DNA repair and recombination proteins [BR:
sks03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FCN78_14345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
Arch_fla_DE
FtsX_ECD
Motif
Other DBs
NCBI-ProteinID:
QCP03605
LinkDB
All DBs
Position
2:268950..270875
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AA seq
641 aa
AA seq
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MLAQALEHVFGFSSFRAGQESVISQIMQGESACAIFPTGAGKSLCYQLPATQLPHLTLVI
SPLLALMHDQIAFMRRKGIAAATIDSTQTPEQTKQVMEQIRRGDIKVLMISVERLNNERF
RQFIAPIPISLLVVDEAHCISEWGHNFRPDYLKLPAYREQLNIPQVLLLTATATPAVVED
MQRKFAISSNNTTLTGFYRPNLHLNVVAVEEAQKQQALIKQLQPDPHLPTVIYVTQQQTA
ENIAEWLQTQHIPATAYHAGMNHETRVSIQEAFMSGRAPCIVATIAFGMGVDKVDIRRVI
HFDLPKSIENYSQEIGRAGRDGENATCTVLANQSSLNVLENFIYGDTPDKAAIQGVLEDI
KQAGQQWEVMLHSLSRTYNIRLLPLKTLLVYLEMAGVITSQYSYFADVKFQCVASPDTIT
AKFQGERREFVAQLFACAVKAKTWYKMDFQQLWQRFGAERKRALKALEYFHEQGWLSLAT
QQATQVFSVSSHEIDVQAQAEQLHHLFAKKEESELARINQLLALLASSTCISQRLADYFG
DRDAPTTCGHCSVCQGHIAHLPPRPELPAIDVQALSSWCQHFAAACDETPSHAATTRFLL
GLSSPLHTKIKAKTIPGFGALASYPFQTVNAHVLAEHGAKQ
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgttggcacaagcacttgagcacgtttttgggttttcatcatttcgggcaggacaagag
tcggtgatttctcagataatgcaaggggagtcggcctgtgcgatttttcctaccggtgcg
ggtaagtcattgtgctatcaactacccgccacgcaactgccccacttaaccctagtgatt
tcacctttgctagcattaatgcatgatcaaatcgcatttatgcgccgcaaaggcattgcc
gccgctaccattgattccacacagactcccgagcaaactaaacaagtgatggagcagatc
cgtcgcggcgacatcaaagtcctgatgatttcggtcgaacggttaaacaacgaacgcttt
cgccaatttattgcccccatcccgatctctttattggtcgtagatgaagcacactgcatc
tctgagtggggccacaattttcgccccgattatctcaaactccccgcctaccgagagcag
ttgaatattccacaggtgttgcttctcaccgcaactgcgacgccggcagtggttgaagac
atgcagcgaaagtttgcgatttcgtcaaataacaccacgttaaccggcttttatcgtcct
aacctacacctgaatgtggtcgccgtggaagaggcgcaaaaacaacaagcgctaattaag
cagttgcagcccgacccccatttaccaactgtcatttatgtcacccagcagcagaccgcg
gagaatatcgccgagtggctacaaacccagcatatccccgcgaccgcttaccatgccggc
atgaatcacgagacgcgtgtatcaatacaagaggcatttatgtcgggccgtgcgccgtgt
attgtcgcgaccatcgcttttgggatgggcgtcgataaggtggacatccggcgtgtcatc
cattttgacttacctaaatcaatcgaaaactatagccaagaaattggccgcgcgggacga
gacggagaaaacgctacgtgcactgtgctcgccaaccaatctagcctgaatgtgctggaa
aactttatctatggcgatacacccgacaaggcagcgattcagggcgtactggaggatata
aaacaagcgggtcaacaatgggaagttatgctgcacagcctgtcacggacgtataatatt
cgccttttaccgcttaaaaccttgctggtttatttagaaatggccggcgtgatcaccagc
caatacagttactttgccgatgtgaagttccaatgtgttgcgtcgccagacaccattacg
gctaaatttcagggtgagcggcgcgaatttgtagcccagctatttgcatgcgcagtcaaa
gccaaaacctggtacaagatggatttccaacaactgtggcaacgctttggggcagaaaga
aagcgcgcgttaaaagcactggaatattttcatgaacaaggttggctgtcacttgccacc
caacaagccacgcaagtcttttcggtcagctcccatgagattgatgttcaagcgcaggcc
gaacaattacatcacctttttgctaaaaaggaagagagcgaactggcccgcatcaaccaa
ttactggctttattggcctcttcaacctgtattagtcagcgccttgccgactactttggt
gatcgcgacgcaccaactacctgtggtcactgctcggtatgccaaggacatattgctcat
ttacctccccgtcctgagttacccgcgatcgacgtgcaagcattatcatcatggtgtcag
cactttgccgccgcttgcgatgaaacgccaagccacgcggcgaccacgcgctttttactc
ggtctatcttcgccgctccataccaaaatcaaagcgaagacaatacccggttttggcgcc
ctcgcgtcgtatccgtttcaaacagtcaacgctcatgtcctcgctgagcacggagccaaa
cagtaa
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