Salinivibrio kushneri: FCN78_15675
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Entry
FCN78_15675 CDS
T05956
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sks
Salinivibrio kushneri
Pathway
sks03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sks00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN78_15675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sks03019
]
FCN78_15675
03009 Ribosome biogenesis [BR:
sks03009
]
FCN78_15675
Enzymes [BR:
sks01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FCN78_15675
Messenger RNA biogenesis [BR:
sks03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCN78_15675
Ribosome biogenesis [BR:
sks03009
]
Prokaryotic type
rRNA helicases
FCN78_15675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QCP03833
LinkDB
All DBs
Position
2:568909..570681
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AA seq
590 aa
AA seq
DB search
MQESVTKFRQLDLADTLLSALDSMGFETPTPIQAASIPVLLEGRDALGKAQTGTGKTAAF
SLPLLNKVDLSQRKPQAIVMAPTRELAIQVAAEMKTLAQNIKGLKVLEIYGGASIVDQMK
ALKSGAHIVVGTPGRVKDLINRDRLKLDEVHTFILDEADEMLKMGFVDDVTWIMEQAPES
AQRILFSATMPPIVKQIVDRFLREPARIDVAGSNRTVEKVEQQFWVVKGVEKDEAMSRLL
ETQDTDASIVFVRTRQDTERLADWLSARGFKSAALHGDIPQSLRERTVDHLKRGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDAESYIHRIGRTGRAGRAGKAILLVRPNQMRMLRTV
ERVTQTKMEEIQLPNRDKVAEARVAQLAGELAEKKDGDAMAPFVELIEQLQNDIDVDATT
LAAMLLQRQQGKRPLFYKGPDPMIAAMEREKQRRERRRDDRQNGTDRRDTNPADWDTYQL
DVGREQGVQVKDIVGAIANELGLNKQNIGAIKLAPAHTFVQLPKTMPKDVFAQLQKLRIR
QKETNAQRVEGQIMRERRGGDRNGGGRGRNERGRGERRFNRARGERRQAQ
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatctgtaaccaaatttcgccagttagatctggccgacacccttttgtctgcg
cttgactcaatgggctttgaaacccccacacctatccaagccgcttctatccctgtactc
ctcgaaggccgtgatgcgctcggtaaagcacaaaccggtacgggtaaaaccgctgcattc
tcgctgccgctgttgaacaaagtcgacttaagccagcgtaagccacaagctatcgttatg
gcaccaacgcgtgagcttgccatccaagtcgcggcggaaatgaagacgctggcacaaaac
atcaaaggcttaaaagtccttgagatttacggcggtgcgtcgattgttgaccaaatgaaa
gcgctgaaaagcggcgcgcacatcgtggtcggtacgccaggacgtgtgaaagacttgatc
aaccgcgatcgcttgaaactcgacgaagtgcatacctttatcctcgacgaagcggatgaa
atgctcaagatgggctttgtggacgatgttacctggatcatggagcaagcgcctgagagt
gcacagcgcatcctgttctcggcaaccatgccgcctatcgtgaaacaaatcgttgatcgc
ttcttgcgtgagccggcgcgtatcgacgtcgcgggtagcaaccgtacggttgagaaggtt
gagcagcagttctgggtggttaaaggtgttgaaaaagacgaagcgatgagccgtctgcta
gaaacgcaagacactgatgcgtctatcgtctttgtgcgcacccgccaagacaccgagcgt
cttgccgactggttgtcagcgcgtggttttaaatcggcggcactgcacggggatatccca
cagtcactgcgtgagcgcacggttgatcacttaaagcgtggcgtgattgatattttggtc
gcgactgacgtcgtggcacgtggccttgatgtaccgcgcatcactcacgtatttaactat
gatattccgtttgatgcggagtcttacattcaccgtattggtcgtactggccgtgctggc
cgcgcgggtaaagcgattctgttggtgcgtccgaaccaaatgcgcatgctgcgcacggtt
gagcgtgtcacgcagaccaagatggaagaaattcagctgccaaaccgcgataaagtggcg
gaagcacgtgtcgctcaactagccggcgagttagctgaaaagaaagatggcgatgccatg
gcacctttcgttgagctgattgagcaactgcaaaacgatatcgacgtggatgcaaccact
ttggcagcgatgttgctacaacgccagcaaggcaagcgtccattgttctacaagggccca
gacccgatgattgcggcgatggagcgtgagaaacaacgccgcgaacgtcgtcgtgacgat
cgtcaaaatggcactgaccgtcgtgacaccaacccagctgattgggatacgtaccaattg
gacgtgggtcgtgagcaaggtgttcaggttaaagatatcgtgggcgcgattgctaatgag
cttggattaaacaagcaaaacattggcgcaatcaagctggccccggcacatacgtttgta
cagctgccgaaaaccatgccgaaagacgtgtttgcacagttgcaaaaactgcgcattcgc
caaaaagaaaccaacgcacagcgtgttgaaggtcagatcatgcgcgagcgtcgtggtggt
gaccgcaatggtggcggtcgtggccgtaatgagcgtggccgtggcgaacgtcgtttcaac
cgtgcgcgcggcgaacgtcgtcaagcacagtaa
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