Skermanella cutis: IGS68_13290
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Entry
IGS68_13290 CDS
T07020
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
skt
Skermanella cutis
Pathway
skt03030
DNA replication
skt03430
Mismatch repair
skt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
skt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IGS68_13290 (dnaE)
03430 Mismatch repair
IGS68_13290 (dnaE)
03440 Homologous recombination
IGS68_13290 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
skt03032
]
IGS68_13290 (dnaE)
03400 DNA repair and recombination proteins [BR:
skt03400
]
IGS68_13290 (dnaE)
Enzymes [BR:
skt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IGS68_13290 (dnaE)
DNA replication proteins [BR:
skt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IGS68_13290 (dnaE)
DNA repair and recombination proteins [BR:
skt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IGS68_13290 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
QQP92111
LinkDB
All DBs
Position
complement(2816736..2820230)
Genome browser
AA seq
1164 aa
AA seq
DB search
MPIADFVHLRVHSAYSLSEGAIKIKELVKICQKQEMPAVAVTDTGNLFGALEFSLAAMDA
GVQPILGCQLGIRRMGPAANGGGKPVGKGVNMPDQLALLVQSETGYQNLTKLISKAFMEG
DPTSAPQIALQDLEGFTDGLIALTGGPSGSVGRLFAEGHKPAARDVAEQLRRLFPGRLYV
ELMRHGLEVEDRIEPDLVDLAYDLDVPLVATNDCFFSTEDMYEAHDALLCIAEGSYVVEA
ERRRLTPEHRFKTAAEMRELFADLPEAVDNTLVIARRCSYLLKPIKPILPAFQAAAEGGR
TEPEELRHQAHEGLTMRLEKQVFTSEMTAEQRAETEKTYRERLDFELNVIENMKFPGYFL
IVSDFIKWAKRHEIPVGPGRGSGAGSVVAWSLTITDLDPLRFGLLFERFLNPERVSMPDF
DIDFCQDRRDEVIRYVQGYYGHDRVAQIITFGKLQARAVLRDVGRVLQMPYGQVDKICKL
VPNNPANPVTLGQAIEGEPMLQQARDSDETVRRLIEIALRLEGLFRHASTHAAGVVIGDR
PLDQLVPLYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLQRAVELITERGDVID
LSNLPLDDVRTYEMMSRGETTGVFQLESSGMRDVLRRLKPNRFDDIIALVSLYRPGPMDN
IPTYIAVKNGEKEPDYMHPWLEPILKDTFGIMIYQEQVMQIAQVLSGYSLGGADLLRRAM
GKKIQAEMDAQRKLFIDGAVGKGVDGEQAGLIFDQVNKFAGYGFNKSHAAAYALVAYQTA
YLKANYPVEFLAASMTLDLGNTDKLNTFRQELVRLKIRLLTPDINKSNPVFRVELLPDGE
RAIRYALAAVKGVGMPAMEAVVSQRNEGGRYTDLFDLARRLDTKVINKRQLENLTCAGAF
DSLNGNRRQVHGGIETLIRYAQAAAAERESGQSSLFGGGGGVTLKVPDLPKVADWDQLDR
LAHEFNAIGFYLSAHPLDGFAKPLSRLRVVNSADLLKKATGGGSTRFPMAGVVINRQERV
AKSGNRFAFVSLSDSTGVYEVTLFSELLATSRELLEPGKSVVLMVDVQVMGEDMRLTCHD
VKPLEDEVARAAEGLQIILSQPEAAPHLRNILDQIGRGRGKISILVDVGGMREAEIALPG
AYAVSAKGRAAIKAIPGVADVLDL
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgccgatagccgacttcgtccacctgcgcgtccactccgcctattcgctctccgaaggg
gcgatcaagatcaaggagttggtcaagatctgccaaaagcaggagatgccggcggtcgcg
gtcaccgacaccggcaacttgttcggggcgctggaattttccctggctgccatggacgcc
ggcgtgcagccgatcctgggatgccagctcggtatccggcgcatggggccggccgcgaac
ggcggcggcaagccggtggggaagggcgtgaacatgcccgaccagctcgcgctcctggtc
cagtccgagaccggctatcaaaatctgacgaagctgatcagcaaggccttcatggagggg
gatccgacctcggcgccccagatcgccctgcaggatctcgaaggcttcaccgacggtctg
atcgccctgaccggcggaccgtccggatcggtcggacgcctgttcgccgaggggcacaag
cccgccgcgcgcgacgtcgcggagcagctgcgccgcctgttccccggccggctctatgtc
gagctgatgcgccacgggctggaggtcgaggaccgcatcgagccggatctggtcgacctg
gcctatgacctggacgtgccgctggtggcgaccaacgactgcttcttctcgaccgaggac
atgtacgaggcccacgacgcgctgctctgcatcgccgagggctcctacgtggtggaggcg
gagaggcggcgcctgacgccggagcaccgcttcaagacggccgccgagatgcgcgagctg
ttcgccgacctgccggaggccgtggacaacaccctggtcatcgcgcggcgctgcagctat
ctgctgaagccgatcaagccgatcctgccggccttccaggctgcggccgagggcggcagg
accgagccggaggaactgcgccaccaggcccacgagggtctgacgatgcggctggagaag
caggtcttcacgtccgaaatgacggcggaacaacgcgcggagaccgagaagacctatcgc
gaaaggctcgacttcgagctgaacgtgatcgagaacatgaagtttcccggctacttcctg
atcgtctccgacttcatcaagtgggcgaagcgccacgagatcccggtcggtccgggccgc
ggctcgggcgccggctcggtcgtggcgtggtcgctgaccatcaccgacctggaccccctg
cgcttcggcctgctgttcgagcggttcctgaaccccgagcgcgtgtcgatgcccgacttc
gacatcgacttctgccaggaccgccgggacgaggtgatccgctacgtgcagggctattac
ggccacgaccgggtcgcccagatcatcaccttcggtaagctccaggcgcgcgccgtgctg
cgcgacgtcggccgggtgctccagatgccttacgggcaagtcgacaagatctgcaagctg
gtgcccaacaatccggccaatcccgtgaccctgggacaggcgatcgagggcgagccgatg
cttcagcaggcccgcgattcggacgagacggtcaggcgcctgatcgagatcgcgctccgc
ctggaggggctgttccgccacgcctcgacccacgcggccggcgtggtgatcggcgaccgt
ccgctggaccagctggtgccgctctaccgcgacccgcgctcggacatgccggtcacccag
ttcaacatgaagtatgtcgagcaggcggggctggtgaagttcgacttcctcggcctgaag
accctgaccgtgctccagcgcgcggtggagctgatcaccgagcgcggcgacgtcatcgac
ctgtccaacctgccgctcgacgacgtcaggacatacgagatgatgtcgcgcggcgagacg
accggcgtgttccagcttgaaagctcgggcatgcgcgacgtgctgcgccgcctcaagccg
aaccggttcgacgacatcatcgcgctggtctccctctaccgtcccggcccgatggacaac
atcccgacctacatcgcggtgaagaacggggagaaagagccggactacatgcatccctgg
ctggagccgatcctgaaggacaccttcgggatcatgatctaccaggaacaggtcatgcag
atcgcccaggtgctgtccggctactcgctcggcggcgccgacctgctgcgccgcgccatg
ggcaagaagatccaggccgagatggacgcccagcgcaagctgttcatcgacggtgccgtc
ggcaagggcgtcgacggggagcaggcgggcctgatcttcgaccaggtgaacaagttcgcc
ggctacggcttcaacaagtcccacgccgccgcctatgcgctggtcgcctaccagaccgcc
tatctgaaggccaattacccggtggagttcctggcggcgtcgatgacgctcgacctgggc
aataccgacaagctgaacaccttccggcaggaactggtccgcctcaagatccgcctgctg
acccccgacatcaacaagtcgaaccccgtcttccgggtggaactgctgcccgacggcgag
cgggcgatccgctacgcccttgccgccgtcaagggcgtcggcatgcccgccatggaggcg
gtggtgagccagaggaacgagggtggccgctatacggacctgttcgacctcgcccgccgg
ctggacaccaaggtgatcaacaagcgccagctggagaacctgacctgcgccggcgccttc
gacagcctgaacggcaaccgccggcaggtccatggcggcatcgagacgctgatccgctat
gcccaggccgcggcggccgaacgggagagcgggcagtccagccttttcggcggagggggc
ggagtgactctgaaggtgcccgacctgccgaaagtcgcggactgggaccagctcgaccgg
ctggcgcacgaattcaacgcgatcggcttctacctgtcggcccatccgctcgacggcttc
gccaagccgctgtcgcgcctgcgggtggtgaactccgccgacctgctcaagaaggcgacc
ggcggtggctcgacccggttccccatggcgggcgtggtgatcaaccggcaggaacgggtc
gccaagagcggcaaccgcttcgccttcgtgagcctgtcggactccacgggcgtctacgag
gtgaccctgttctcggaactgctggcgacctcgcgcgagttgctggagccgggcaagagc
gtcgtcctgatggtcgacgtgcaggtcatgggcgaggacatgcggctgacctgccatgac
gtgaagccgttggaggacgaggtcgcccgggccgccgaggggttgcagatcatcctcagc
cagccggaagcggccccccatctccgcaacatcctggaccagatcggacggggccgcggc
aagatatcgatcctggtcgatgtcggcggcatgcgggaggccgagatcgcgctgccggga
gcctatgcggtctcggcgaagggcagggccgcgatcaaggcgattcccggcgtggcggac
gtgctcgatctttag
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