Skermanella cutis: IGS68_18145
Help
Entry
IGS68_18145 CDS
T07020
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
skt
Skermanella cutis
Pathway
skt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
skt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IGS68_18145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
skt03400
]
IGS68_18145
Enzymes [BR:
skt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IGS68_18145
DNA repair and recombination proteins [BR:
skt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IGS68_18145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_30
SecA_DEAD
RecG_dom3_C
UvrB_inter
AAA_25
Cas3-like_C_2
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QQP87980
LinkDB
All DBs
Position
complement(3876044..3879487)
Genome browser
AA seq
1147 aa
AA seq
DB search
MDHNLEADRVPGRDARPFDGLELDLGRPGRRTVAGVPEGLDGMLLGHLAQRADSAGLLHI
VRDHRRLVRLRRALAFFAPQLEVLPLLSWDCAPYERRSPSAAVAARRVDTLLRLGRPAEG
PRLILATAAAFLRRLPPQGVLEAATFRAAPEDDIEEPLRRFLLRNGYSPAETVREVGDFL
WDDDRVEILPPGQRSPVILELLNGTLDAVRRGGADGEELERLELPPVSEVVLTDESIARF
QTNYQEQFGRVEGNDPLFEAVGHGRRLTGMEHWLPLFYGGTETLCEYLPGCPVTLDDGVE
SDRDDYLEQVADAFQARKAMGTIEEKAHLPAFHPLPPEQVFVDAEAWDVCLEPRAVLVFR
AAPPEAGEDMPDAGARPGPSFHDDDGGGKLARHVRTLRAGGARVLFAVERDVQHGPLRRR
IGMPEMPTAETWGDAGAGDAAVATLPVAAGFEVDGISVIARADIVRSDRRRSAGTADARR
DALLPDVPPIALGDLVVHADHGVALCEGLETIDAGGAPHDCLRLVYRQGDKLFVPVENVD
LLWRFGTPGETIQLDKLGGAAWPNRLERMRETLRDAAHELIATAAKRSLAQVDPIVPDRA
AYRRFSGRFPYTETEDQQTAIDDVLADLASGKVMDRLVVGDVGFGKTEIALRAAFAVAVA
GRQVAVVAPTTPLARQHADEFRERFSGFGMEIAELTGGTATDEAKAARQRIADGQARIAV
GTQALLGEAVRFKDLGLLVLDEEQRLGVKQKERLKDIAEGVHVLTMTATPIPRTLQLALG
GLRDLSLIGTAPVERQPVRTRVLTYDGDIIRQALLRERERGGQSFYVCPRLADLDLVGER
LEALVPDLRVLRAHGKMAPEELDDAITAFVRGGADVLLATNIIEAGLNIPNANTLVVHRA
DMFGLAQLHQLRGRVGRGSTRAYAWMTVESEADLSEAARGRLDAIAMLSDPGAGFNVASQ
DLELRGGGNLLGEEQSGSIRAVGVDLFQEMLRQAIEAVQAGKEPEEFWTPRISLGMPVLI
PESYVADLDERMALYRSIAALHTAEAAKAFTRDLARRHGPVPPEVGTLIGLGELKRLCRD
AGVEQLDVGPRGALIAFRQEPPGLEAFLDRTEGARRREDGNLVVPLAEESSARLAAARLL
LRGLAGG
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggaccacaatcttgaagcggaccgcgttcccggccgtgacgcgcgcccgttcgacggg
ctggaactcgatctcggccggcccggacggcggaccgtcgcgggcgtgcccgaggggctc
gacgggatgctgctgggccatctggcgcaacgcgcggactccgccggcctgctccatatc
gtccgcgaccaccggcggctggtgcggctgcggcgcgcgctggccttcttcgcgccgcag
ctggaggttctgccgttgctgagttgggactgcgcgccctatgagcggcgctccccctcc
gcggcggtcgcggcccgccgggtcgatacgttgctgaggctgggccggccggccgagggg
ccgaggctgatcctggcgacggccgccgcgttcctgcgccgcctgccgccccagggcgtg
ctggaggcggcgaccttccgggcggcgccggaggacgacatcgaggaaccgttgcggcgc
ttcctgctgcggaacgggtattccccggcggagaccgtccgggaggtcggcgacttcctc
tgggacgacgaccgggtggagatcctgccgcccggccagcggtcgccggtcatactggaa
ttgctgaacggcaccctggacgcggtccgtcggggcggtgccgacggcgaggaactggag
cggctggaactgccacccgtgtccgaggtggtcctgaccgacgagagcatcgcgcgcttc
cagacgaactatcaggagcagttcgggcgagtcgagggaaacgacccgctgttcgaggcg
gtcgggcatggccggcggctcaccgggatggagcactggctgccgctgttctacggcggc
accgagaccctgtgcgaatacctgccgggctgcccggtcaccctggacgacggggtggaa
tccgaccgcgacgactacctggagcaggtcgccgacgccttccaggcgcgcaaggcgatg
ggcacgatcgaggagaaggcccatcttcccgccttccatccgctgccgcccgagcaggtc
ttcgtcgatgccgaggcctgggacgtctgcctggagccgcgcgcggtcctcgtcttccgc
gcggctccgcccgaagcgggcgaggacatgccggacgccggcgcccgtcccggtccgagc
tttcatgacgacgacggtggcggaaagctggcccggcatgtccgcactctccgcgccggc
ggcgcgcgggtcctgttcgcggtcgagcgcgatgtccagcatggtcccctccgacggcgg
atcggcatgccggaaatgccgacggcggagacctggggcgacgccggagccggcgacgcg
gcggtcgcgaccctgccggtcgcggccggtttcgaggtggatggcatcagcgtcatcgcg
cgggccgacatagttcggtccgatcggcgccggagcgccgggaccgccgatgcccggcgc
gacgccctgctgcccgacgtgccgccgatcgccctgggcgacctggtggtccatgccgat
cacggcgtggccctgtgcgaggggctggagacgatcgacgccggcggggcgccccacgat
tgcctgcgcctggtctatcgccagggcgacaagctgttcgtcccggtcgagaacgtggac
ctgctttggcggttcggcacgcccggcgagacgatccagctggacaagctgggaggcgcc
gcctggcccaaccggctggagcgcatgcgggaaaccctgcgcgacgcggcgcacgagctg
atcgccacggcggcgaaacggtcgctggcccaggtcgatccgatcgtgccggaccgcgcg
gcctaccgccggttcagcggccggttcccctataccgagaccgaggaccagcagacggcg
atcgacgacgtgctggccgacctcgcgtcgggcaaggtgatggaccggctggtggtcggc
gacgtcggcttcggcaagaccgagatcgcgttgcgcgccgccttcgcggtggcggtcgcc
ggccggcaggtcgcggtggtggcgccgaccaccccgctcgcccggcagcacgccgacgag
ttccgcgagcgcttctccggcttcgggatggagatcgccgagctgaccggcggcacggcg
acggacgaggcgaaggcggcgcggcagcggatcgcggacgggcaggcccgcatcgcggtc
ggcacccaggccctcctgggcgaggccgtccgattcaaggatctcggccttctggtcctg
gacgaggagcagcggctcggcgtcaagcagaaggaacgcctgaaggacatcgccgagggc
gttcacgtcctgaccatgacggcgaccccgatcccgcgcacgcttcagctcgcgctgggc
gggcttcgcgacctcagcctgatcggcaccgctccggtggagcgccagccggtccgcacc
cgcgtcctgacctacgacggcgacatcatccgccaggcgctcctgcgcgagcgcgagcgc
ggcggccagagcttctatgtctgcccccggctcgccgacctcgaccttgtgggagagcgt
ctggaggcactggttcccgaccttcgggtgctgcgcgcccacggcaagatggcgcccgag
gagttggacgacgcgatcacggccttcgtgcgcggcggcgccgacgtgcttcttgccacc
aacatcatcgaggcggggctgaacatccccaacgccaacacgctggtcgtccaccgggcc
gacatgttcggcttggcccagctccaccagctgcgcggccgggtcgggcgcggcagcacg
cgggcctatgcctggatgacggtggagtcggaagccgacctgtcggaggcggcgcgcggc
cggctggacgccattgccatgctgagcgatccgggggccgggttcaacgtcgccagccag
gacctggaactgcgcggcggcggcaacctgctgggcgaggagcagtccggcagcatccgc
gccgtcggggtcgacctgttccaggagatgctgaggcaggcgatcgaggcggtccaggcc
ggcaaggagccggaggagttctggaccccccggatctcgctcggcatgcccgtgctgata
cccgagagctacgtcgccgatctggacgagcgcatggcgctctaccgctccatcgccgcc
ctccataccgccgaggcggccaaggccttcacccgggacctggcgcggcgccacggcccg
gtccctccggaggtcggcaccctgatcggcctcggcgaactgaagcgcctgtgccgcgac
gccggcgtggagcagctcgacgtcgggccgcgcggcgccctgatcgcgttccggcaagaa
cccccggggctggaggcgttcctcgatcgcaccgaaggcgcacggcggcgtgaggacggc
aacctggtggttccgctggcggaggagtcctccgcaaggctggccgcggcccggctgctg
ctgcgtgggctggccggcgggtaa
DBGET
integrated database retrieval system
