Skermanella cutis: IGS68_26045
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Entry
IGS68_26045 CDS
T07020
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
skt
Skermanella cutis
Pathway
skt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
skt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IGS68_26045 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
skt03019
]
IGS68_26045 (pnp)
03016 Transfer RNA biogenesis [BR:
skt03016
]
IGS68_26045 (pnp)
Enzymes [BR:
skt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IGS68_26045 (pnp)
Messenger RNA biogenesis [BR:
skt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IGS68_26045 (pnp)
Transfer RNA biogenesis [BR:
skt03016
]
Prokaryotic type
tRNA degradation factors
IGS68_26045 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_RRP5
S1_2
DUF2399
KH_2
aRib
Motif
Other DBs
NCBI-ProteinID:
QQP89399
LinkDB
All DBs
Position
5596425..5598536
Genome browser
AA seq
703 aa
AA seq
DB search
MFNVYRKEIDWGGRKLVLETGKVARQADGAVMATYGETTVLCTVVAAKAAKPGVDFFPLT
VNYQEKAFAAGKIPGGFFKREGRPSEKETLVSRLIDRPIRPLFADGFRNETQVICTVLSH
DMENDPDIVAMVGTSAALTISGIPFLGPIGAARVSYRNGEYALNPLLDDEEGDLDLVVAG
TRDGVLMVESEAKELSEDVMLGAVMFGHRSFQPVIDAIIDLAEQCAKEPWDMPAAPYDAA
AIKARVKETVGEDIKAAYSEIRKQDRQNKLGAAKQKALEALTSDEIPAEAIAGTFKDVES
DVLRGTVIDTGRRIDGRSTTDIRQIVAEVGVLPRAHGSALFTRGETQALVVATLGTSQDE
QIIDALEGEYRESFMLHYNFPPYSVGEAGRVGSPGRREIGHGKLAWRAVRPLLPTKEQFP
YTMRIVSEITESNGSSSMATVCGASLALMDSGAPLPRPVAGIAMGLIKEDRGFAVLSDIL
GDEDHLGDMDFKVAGTEKGVTALQMDIKITSITEEIMRVALDQARGGRMHILGEMAKAIG
GAREAVNQNAPRITVINIPKEKIRDVIGSGGKVIREIVEQTGAKIDIEDDGTVKVAAVDG
KASQAAIDWIRGIVAEPELGVIYTGKVVKVVDFGAFVNFLGSRDGLVHISELKNERVGKV
SDVVKQGDEVKVKVLGFDDRGKVKLSMKTVDQATGEDLSKKAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacgtctacagaaaagaaatcgattggggcggacgcaagctggtcctggagacc
gggaaggtcgcccgccaggccgatggcgccgtgatggcgacgtacggcgagacgaccgtg
ctctgcaccgtcgtcgcggccaaggcggccaagcccggagtcgatttctttccgctgacc
gtcaattaccaggagaaggcgttcgccgccggcaagatcccgggcggcttcttcaagcgt
gaaggccgtccctccgagaaggagacgctggtcagccgcctgatcgaccggccgatccgc
ccgctgttcgccgacggcttccgcaacgagacgcaggtcatctgcaccgtgctcagccac
gacatggagaacgatcccgacatcgtcgccatggtcggcacctcggccgccctgaccatc
tccggcatccccttcctgggcccgatcggcgccgcccgcgtcagctacaggaacggcgag
tacgcgctgaacccgctgctcgacgacgaggagggcgatctcgacctggtggtcgccggt
acgcgcgacggcgtgctgatggtcgagtccgaggccaaggaactgtccgaggacgtcatg
ctgggcgccgtcatgttcggccatcgcagcttccagccggtcatcgacgcgatcatcgac
ctggccgagcagtgcgccaaggaaccctgggacatgcccgcggccccctatgacgccgcc
gccatcaaggcccgcgtcaaggagaccgtcggcgaggacatcaaggcggcctattccgag
atccgcaagcaggaccgccagaacaagctgggcgccgccaagcagaaggcgctggaggcc
ctgacctcggacgagatccccgccgaggcgatcgccggcaccttcaaggacgtcgagagc
gacgtgctgcgcggcacggtcatcgacaccggccgccggatcgacggccgctcgaccacc
gacatccgccagatcgtggccgaggtcggcgtgctgccccgcgcccacggttccgccctg
ttcacccgcggcgagacccaggccctggtggtcgccacgctcggcaccagccaggacgag
cagatcatcgacgcgctggaaggcgagtaccgcgagagcttcatgctccactacaacttc
ccgccctactcggtcggcgaggcgggccgcgtcggctcccccggccggcgcgagatcggg
cacggcaagctggcgtggcgcgcggtgcgtccgctgctcccgaccaaggagcagttcccc
tacaccatgcgcatcgtgtcggagatcaccgaatccaacggctcctcgtcgatggcgacc
gtgtgcggcgcctcgctggccctgatggactccggcgctcccctgccccgtccggtcgcc
ggcatcgcgatgggcctgatcaaggaggaccgcggcttcgccgtgctgtccgacatcctc
ggcgacgaggaccacctgggcgacatggacttcaaggtggccggcaccgagaagggcgtc
accgcgctccagatggacatcaagatcacctcgatcaccgaggagatcatgcgcgtcgcc
ctggaccaggcgcgcggcggccggatgcacatcctgggcgagatggccaaggcgatcggc
ggcgcccgcgaggcggtcaaccagaacgccccgcgcatcaccgtgatcaacatccccaag
gagaagatccgcgacgtgatcggctccggcggcaaggtgatccgcgagatcgtcgagcag
accggcgctaagatcgacatcgaggacgacggcacggtcaaggtcgcggcggtcgacgga
aaggccagccaggccgccatcgactggatccgcggcatcgtggccgagccggaactgggc
gtgatctacaccggcaaggtcgtgaaggtggtcgatttcggcgccttcgtgaacttcctg
ggctcgcgcgacggcctggtccacatctccgagctgaagaacgagcgcgtcggcaaggtc
agcgacgtggtcaagcagggcgacgaggtgaaggtcaaggtcctgggcttcgacgaccgc
ggcaaggtcaagctgtccatgaagacggtcgaccaggcgaccggcgaagacttgagcaag
aaggccgagtag
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