Sphaerospermopsis kisseleviana: NIES73_11610
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Entry
NIES73_11610 CDS
T10228
Name
(GenBank) DNA-directed RNA polymerase subunit beta''
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
skv Sphaerospermopsis kisseleviana
Pathway
skv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
skv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES73_11610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
skv03021
]
NIES73_11610
03400 DNA repair and recombination proteins [BR:
skv03400
]
NIES73_11610
Enzymes [BR:
skv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES73_11610
Transcription machinery [BR:
skv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES73_11610
DNA repair and recombination proteins [BR:
skv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES73_11610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAZ79914
LinkDB
All DBs
Position
complement(1276118..1280248)
Genome browser
AA seq
1376 aa
AA seq
DB search
MTEKMIFRNLVVNKGQLRNLIAWSFTHYGTARTAVMADKLKDLGFRYATKAGVSISVDDL
MVPPSKKSLLEAAEAEILSTEERFKRGEITEVERFQKVIDTWNGTSESLKDEVVTYFKKT
NPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIISS
YGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREFDCGTTRGIPLRDMTDGAKVLIPIG
TRLMGRVVAQDVVHPTTGEMLAPRNTPISDDLAAEIQKAGVKEVIVRSPLTCEAARSVCQ
HCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRAKVEGT
VKFSRKLKTRPYRTRHGEDALYAETNGTMVLETKGDRENQEISITQGSTLYINPGQQVKI
AQLIAEVALGGKTTRANTEKAVKDVATDLAGEVQFADVVAEQKTDRQGNTTTTAARGGLI
WILSGEVYNLPPGAELVVKNGDAIASNGVLAETKLTTVHGGVVRLPEAIPGKATREIEII
TASVILDQATVTVHSSQGKNNYLIHTGDRLQVLRHGDSEESPVTKSQTFNLRATPGTKVQ
NGQVVAELIDDRYRTTTGGFLKFAGIEVQKKGKAKLGYEVVTGGTLLWIPEESHEVNKDI
SLLLVEDGQFVEAGTEVVKDIFCQTSGVIEVTQKNDILREIVIKPGELLMVDDPETVIGR
DNTFIQPGEEFMGTVATELRYIQYVESPEGPALLSRPVVEFDVPAHPDVPSTTSISQQTG
RSIQLRALQRLPYKDGERVKSVEGVELLRTQLVLEIEQEGEQDHTSPLAADIELVADSEN
ADIQRLQLVILESLVIRRDIAADATQGSTHTTLEVEDGITIAPGAVVARTQILCKEGGTV
RGVRRDTEAVRRCLVLRETDMITVETTTAPKVKKGDLLVEGTEIAPGVLAPESGQVISIK
ASDSKGDSSQSPITNHPSPITNHPSPYTITIRVGRPYRVSPGAVLQIEDGGLVQRGDNLV
LLVFERAKTGDIIQGLPRIEELLEARKPKEACILCRRPGEVKVVYGDGDEALGREAYAIK
VLEAGGSVTDYPLGPGQNLIVPDGVHVEAGQPLTDGPSNPHEILEIFFSLGSEEGIYACA
SHALQKVQSFLVNEVQMVYQSQGIDIADKHIEVIVRQMTNKVRIDDGGDTTMLPGELVEL
RQVEQVNEAMSITGGAKAQYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSD
WLRGLKENVIIGRLIPAGTGYNTYEETTTIEDYGTDLGTGVLDEVDDSLDMVLDDRTAKL
YSLDSSDLSDSSYSSRRGDRSIYDDDDDLIADEVIAGVEEEEEEEYEEEDDDYDEE
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaaaatgatttttcgtaaccttgttgttaataaaggtcaactgagaaactta
attgcatggtcatttacccattacgggacggctcggactgcggtaatggcagataaactt
aaagacttaggctttcgttatgctaccaaagccggagtttccattagtgttgatgatttg
atggttcccccttctaaaaaatccctcctggaagcagcagaagcagaaattctcagcacc
gaggaaagatttaaacgaggagaaatcacagaagttgaacgtttccaaaaagtgattgat
acctggaatggaacttccgaaagtctcaaagatgaagtagtgacatacttcaaaaaaacc
aatcccctcaactccgtatatatgatggcattctcaggagctagagggaatatctctcaa
gtacggcaattagtgggaatgcggggactaatggctgacccccaaggggaaattattgat
ttacccattaaaaccaacttccgagaaggattaactgttacagaatatattatttctagt
tatggagcgagaaagggattagttgatacagcattaagaaccgctgactctggatatctc
acccggcggttggtggatgtttcccaggatgtgattattagagaatttgactgtggcact
accaggggtattcctctacgggatatgacagatggggctaaagtattaattcccattggg
acaagattaatggggcgggtagtggctcaagatgtagttcatccgaccacaggagaaatg
ctggcaccccgaaatactccgatttctgacgacttagcagcagaaattcaaaaagcagga
gtgaaagaggtcatagtgcgatcgcccctcacctgtgaagcagcccgttcagtatgtcaa
cactgttatggttggagtttagcacacgccaaaatggtagacttaggggaagcggtggga
attatcgcggctcaaagtattggcgaaccaggtacgcaattaaccatgcggactttccac
actgggggagtatttaccggagaagttgcccaacaagtgcgagcgaaagttgaaggtaca
gtaaaattttctcgcaagttgaaaactcgcccctatcgtacccgtcacggggaagatgcc
ctatatgcggaaaccaacggcactatggttttagaaaccaagggagatagagaaaatcaa
gaaatttccattacccaaggttcaaccttatatattaaccctggacaacaagtaaaaatt
gcccaattaatagcagaagtagctttaggcggtaaaaccaccagagcaaacacagaaaaa
gccgttaaagacgtagcaaccgacctagccggagaagtacaatttgccgatgtagtagca
gaacaaaaaaccgaccgacaaggtaacactaccaccacagcggccagagggggattaatt
tggattttatctggagaagtgtataacctaccaccaggagcagaattagtagtaaaaaat
ggagatgcgatcgcctccaatggagttttagcagaaaccaaattaaccaccgtacatggt
ggagtagtgcgactgccagaagctatccccggaaaagctaccagggaaattgaaattatt
accgcttccgtgatattggatcaggcgacggtaacggttcacagttcccaagggaaaaat
aattacttaattcatacaggtgacaggttacaggtgctacgccacggtgacagtgaagaa
tcaccagtcaccaagtctcaaacttttaacctccgtgctactccaggaacaaaagtccaa
aatggtcaagtagtagcagaattaattgatgaccgttatcgcaccaccacaggcggcttc
ttaaaatttgccggcattgaagttcagaaaaaaggtaaagccaaattaggctatgaagtg
gtaacaggaggaacgctgttatggataccagaagaaagccatgaagtaaacaaagatatt
tccttattgttagtagaagatgggcaatttgtagaagctggcacagaagtagtcaaagac
attttctgtcaaaccagcggcgtgatagaagttacccagaaaaacgacattttgcgggaa
atagtcatcaaacctggtgaactgttaatggtcgatgatccagaaacagtaattggtaga
gataacacctttatccagcccggtgaagaatttatgggaacagtagccacagaactgcga
tatattcagtatgtagaatcccccgaaggaccagccctactaagtcgtccagtagtagaa
tttgacgtaccagcccaccctgacgtaccctctacaacctccatcagtcaacaaacaggc
agatccattcaactacgggcattacagcgtttaccctacaaagatggagaacgagtaaaa
tccgtcgaaggagtcgaactactgcggacccaattagtattagaaattgaacaagaagga
gaacaagaccatacttcacccctagcagcagacattgaactagtagcagatagtgaaaac
gccgacattcaaagattgcaactagtaattttagaatccttagtaattcgccgagatatt
gccgcagatgccacccaaggcagtacccatactaccctagaagtagaagatggcatcacc
atagcaccgggggcagtagtagcaagaacacagatattgtgtaaagaagggggaacagta
cgcggtgtcaggagagatacagaagcagtgcgtcgttgtttagtcctgcgagaaactgac
atgatcaccgtagaaactacgacagcaccaaaggtgaaaaaaggtgatttgttagtagaa
ggaacagaaattgccccaggggtactagcaccagaatcaggacaagtaatttcaatcaaa
gcaagtgacagtaaaggtgacagttcccaatcacccatcaccaatcacccatcaccaatc
accaatcacccatcaccatacaccattaccattcgcgttggtcgtccttaccgagtcagt
cctggggcagtgttgcaaattgaagacgggggactggtgcaacggggtgataatttggtg
ttgttggtgtttgagagggcgaaaactggggatattatccaaggtttgccaagaattgaa
gaattgttagaagctcggaaacccaaagaagcttgtattttatgccgtcgtcctggtgag
gtaaaagtcgtttatggagatggagatgaagctttagggagggaagcttatgctattaaa
gttttagaagctggtggtagcgttaccgattatccccttggaccagggcaaaatctgata
gttcctgatggtgttcatgtagaagctggacaacccttaaccgatggaccttctaacccc
catgagatattagaaatattctttagcttaggttcagaagaaggaatctatgcctgtgct
agtcatgccttacaaaaagtacaaagctttttagtaaatgaagtgcaaatggtgtatcag
tcccaaggcattgatattgcagataagcacattgaagtaattgtccggcagatgacgaac
aaagtccgcattgacgatggtggagacaccaccatgttgcccggtgaattagtagaattg
cgccaagtagaacaagtaaacgaagcaatgtccatcacaggcggtgcaaaagcgcagtat
actccagtattgttaggaattaccaaagcatccttaaatactgacagctttatttcagcg
gcctccttccaagaaacaaccagagtattaactgaagcagccattgaaggtaaatctgat
tggttacggggcttgaaagaaaatgtaatcattgggcgattgattcctgctggcactggt
tacaacacctatgaagaaaccaccaccattgaagactatggtactgatttaggtactggg
gttttagatgaagtagatgattcactagatatggttttagacgaccgcaccgctaaatta
tacagcttagattcttctgacttaagtgatagtagttacagcagtagacggggtgacagg
tctatttatgacgacgacgacgatttaattgctgatgaagtgattgcaggtgttgaagaa
gaagaagaagaagaatacgaagaagaagacgatgattatgatgaagaataa
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