Sphaerospermopsis kisseleviana: NIES73_47350
Help
Entry
NIES73_47350 CDS
T10228
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
skv Sphaerospermopsis kisseleviana
Brite
KEGG Orthology (KO) [BR:
skv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
skv03016
]
NIES73_47350
Enzymes [BR:
skv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NIES73_47350
Transfer RNA biogenesis [BR:
skv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NIES73_47350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
HTH_RNase_II
CSD_RNase_II
KhtT_N
Exonuc_VIII
Motif
Other DBs
NCBI-ProteinID:
BAZ83448
LinkDB
All DBs
Position
complement(5183560..5185614)
Genome browser
AA seq
684 aa
AA seq
DB search
MEKGTLVEFRVQGDRRLGVVDRPDGKTRWFVVDERGQSHSLAPRQLTYTVNGQTYKPADI
PSFLSQVQTYLDPSSLEIAWEILVEDGETVTPSQMANLLFSESEPQHCYAAHFLLSDDKM
YFKQKGDVYEPRSAAQVAERKHQIEVEAQKAKGQQEFLARVEQALQGESVEWQKPDRQRL
EALEKYATFVADIVRMGINAESLVRNYPPPAPVLETMNMLGRSATPQAALQLLIDLGWWS
PHENLFLRRSSIPVQFPSKVLEVAQQHLDFPPADLDTNRLDLTHLKVYTIDDESTTEIDD
GLSCENLADGRQRLWVHIADPTRWLMPEDELDLEARKRGSTVYLPTGMIPMFPEVLATGP
MSLVQGKICCALSFGVVLDESGAVEDYTIHPTLIKPTYRLTYEDVDEMLELGVQAEPEIE
AIANLAQKRKTWRYNQGAISINMPEAMIKVKDDDISIDILDDSPSRQLVAEMMILAGEVA
ARYGQTHNIPLPFRGQPQPELPPEEELLQLPAGFVRFCALRRCMPKSEMSITPVRHAGLG
LDTYTQATSPIRRYSDLLTHFQLKAHLRGEDLPFSAEQLKEVMMTVSTTTQELTMVERQT
NRYYALEYLRRNPEEIWQVTILMWLREDSNLALILLEDLGLQLPMVFRRSVSLGEQVLVK
VSIADPQKDIIQFQEIIYQEAVSG
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaggggacgctagttgaatttagggttcaaggcgatcgccgtctgggagtggta
gatcgtccagacggaaagacccgttggtttgtggtagatgaacgaggtcaatcccacagc
ctcgcgccgcgacaactaacctatacagttaatggacaaacttataaacctgctgatatt
cccagctttttaagtcaagttcaaacctatctagatccatctagtttagaaatagcttgg
gaaatattggtggaagacggggaaacagtcactcccagtcaaatggcaaatttgctgttt
tcagaatcagaaccacagcactgttacgccgcccatttcttgttatccgatgataaaatg
tatttcaagcaaaaaggcgatgtttacgaaccacgtagcgccgcacaagtagcagaacgg
aaacaccaaatagaagtagaagcgcaaaaagccaagggacagcaggaatttctagcgcgt
gtagaacaggcactccaaggcgaaagcgtagaatggcaaaaaccagaccgccagcgtttg
gaagcattagaaaaatatgcgactttcgtggcggatattgtgcgaatggggataaatgcg
gagtccttggtacggaattatccacccccagccccagtattagaaaccatgaatatgctg
ggacgttctgcaactccccaagcagccctgcaactattgatcgacttgggttggtggagt
ccccatgaaaacctgttcctgcgtcgttcttcaattcccgttcagttccctagtaaggta
ttagaagtggcgcaacaacatttggattttccaccagcagacttagacaccaatcgtctg
gatttaacacatctcaaggtatacactattgatgatgaaagtaccacagaaatagacgac
ggtttaagttgtgaaaatctcgccgatggacgacaacggctttgggtgcatattgctgat
cctactcgctggttaatgccagaagatgaattagatttagaagcgagaaaacggggtagt
acagtttacttacctacgggaatgatacctatgttccccgaagtcttagctacaggtcca
atgagtttggtacaggggaaaatttgttgcgctctcagctttggtgtagttttagatgaa
agcggcgcagttgaagactatactatccatcccactttaatcaaacctacctatcgcctc
acctacgaagatgtagatgaaatgctggagttgggagtacaagcagaaccagaaatagag
gcgatcgccaatttggcacaaaagcggaaaacctggcgatataaccaaggcgcgatcagc
atcaatatgcccgaagcaatgatcaaagtcaaagacgatgatatcagcattgatatatta
gatgattctccatctcggcagttagtagcagaaatgatgatccttgctggggaagtagca
gcacgttatggtcaaacccataacatccccctaccatttcgcggacaaccccaaccagaa
ctccccccagaagaagaactcttacagcttcccgccggtttcgttcgtttttgcgccctg
cgtcgctgtatgcctaaaagtgaaatgagtattaccccagtacgtcatgccggtttaggc
ttagatacttacactcaagcaacttcccccatccgtcgttacagcgacttacttacccac
tttcaactgaaagcacatttacggggtgaagatttgccattttctgctgaacaactcaaa
gaagtgatgatgacagtcagcactaccacccaagaactaacaatggtagaacggcaaacc
aacaggtattatgctttagaatatttacgtcgtaatcctgaagaaatatggcaagtcaca
attttgatgtggttacgggaagatagcaacttagcattaattctcttagaagacttgggt
ttacagttaccaatggtttttaggcgttctgtaagtttaggtgaacaagtattagtaaaa
gtcagcattgctgatcctcaaaaagacatcattcagtttcaagagataatttatcaagaa
gctgttagtgggtag
DBGET
integrated database retrieval system
