Streptomyces koyangensis: D0C37_09025
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Entry
D0C37_09025 CDS
T06436
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sky
Streptomyces koyangensis
Pathway
sky03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sky00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0C37_09025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sky03021
]
D0C37_09025
03019 Messenger RNA biogenesis [BR:
sky03019
]
D0C37_09025
Transcription machinery [BR:
sky03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D0C37_09025
Messenger RNA biogenesis [BR:
sky03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D0C37_09025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA
NACHT
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXQ54726
UniProt:
A0A385D8P0
LinkDB
All DBs
Position
complement(2149818..2151875)
Genome browser
AA seq
685 aa
AA seq
DB search
MSDTTDLMGVTADSTVDSAAAPATDASAAPAAGSRRRRGTGLEGMVLAELQQVASGLGIR
GTARMRKSQLIEVIKEAQAGGGAAAPAKSEPEAAKPKRRATSKARTGEAEGEAAAEPAQK
PAKAAEKKQAKAEQAEPEAQQGSQQQIDIPGQGAGDEQPAGERRRRRATAEAGSPEQAEA
KQERAAKQQDQKGEGRGDDGSGQQDGGEGRRDRQNRRDRDRDRGDRERGDRSDRGERGGR
DRDRRKGDDGGQGGGNRQQQGGGQNRDRHDDFDDDGGGRRGRRGRYRDRRGRRGRDEVGE
PQVNEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVR
QPKDGERREKFNALVRLDSVNGMAPESGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRII
DLVSPIGKGQRGLIVAPPKTGKTMIMQAVANAITHNNPECHLMVVLVDERPEEVTDMQRS
VKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASG
RILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNME
LKLDRKLADKRIFPAVDVDASGTRKEEILLSGEELGIVWKLRRVLHALDQQQAIELLLDK
MRKTQSNAEFLLQIQKTTPTAGGND
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgactgccgacagcacggttgattccgctgcc
gcgcccgccacggacgcctcagcggcgcctgcggccggttcccggcggcgccgcggcacc
ggcctagagggcatggtgctggccgagcttcagcaggtcgcctcgggcctcgggatcagg
ggcaccgcgcggatgcgcaagagccagctgatcgaggtcatcaaggaagcgcaggcgggt
ggcggcgctgccgccccggccaagagcgagcccgaggccgccaagccgaagcgccgggcc
acctccaaggcccgtaccggcgaggccgagggcgaggccgccgccgaaccggcgcagaag
cccgccaaggccgccgagaagaagcaggccaaggccgagcaggcggagcccgaggcgcag
cagggctcccagcagcagatcgacatcccgggccagggcgccggggacgagcagccggcc
ggtgagcgccgccgtcgccgcgccaccgccgaggcgggcagccccgagcaggccgaggcc
aagcaggagcgcgccgccaagcagcaggaccagaagggcgagggccgcggcgacgacggc
tccggccagcaggacggcggcgagggccgccgggaccgccagaaccgccgggaccgggac
cgcgaccgcggtgaccgtgagcgcggcgaccgttccgaccgcggggagcgcggcggccgg
gaccgcgaccgtcgcaagggcgacgacggcggccagggcggcggcaaccgccagcagcag
ggcggcggccagaaccgtgaccgccacgacgacttcgacgacgacggcggcggccgtcgc
gggcgccgtggccgctaccgcgaccgccggggccgccgcggccgcgacgaggtcggcgag
ccgcaggtcaacgaggacgacgtgctgatccccgtcgcgggcatcctcgacatcctcgac
aactacgcgttcatccggacctccggctacctgcccggccccaacgacgtgtacgtctcg
ctcgcccaggtccgcaagaacggcctgcgcaagggcgaccacgtcaccggcgcggtccgc
cagcccaaggacggcgagcgccgcgagaagttcaacgcgctggtccgcctcgactccgtc
aacggcatggcgcccgaatcgggccgtggccgcccggagttcaacaagctgacgccgctg
tacccgcaggaccggctccgcctggaaaccgacccgggtgtgctgaccacgcggatcatc
gacctcgtgtcgccgatcggcaagggccagcgcggtctgatcgtggccccgccgaagacc
ggcaagaccatgatcatgcaggccgtggccaacgcgatcacgcacaacaaccccgagtgc
cacctcatggtcgtcctcgtcgacgagcggcccgaagaggtcaccgacatgcagcggtcg
gtcaagggcgaggtcatctcctcgaccttcgaccgccctgccgaggaccacaccaccgtc
gccgaactggccatcgagcgcgccaagcgcctcgtggagctgggccacgacgtggttgtc
ctgctggactccatcacccgcctgggccgcgcctacaacctggccgcgcccgcctccggc
cgcatcctctccggtggtgtcgactcgaccgcgctctacccgccgaagcgcttcttcggt
gcggcgcgcaacatcgaggacggcggctcgctgaccatcctcgccaccgcgctggtcgac
accggctcgcggatggacgaggtgatcttcgaggagttcaagggcaccggcaacatggag
ctcaagctcgaccggaagctcgccgacaagcgcatcttcccggccgtcgacgtcgacgcc
tccggcacccgcaaggaggagatcctcctcagcggcgaggaactgggcatcgtctggaag
ctgcgccgggtgctgcacgcgctcgaccagcagcaggcgatcgagctgctgctcgacaag
atgcgcaagacgcagtcgaacgccgagttcctgctccagatccagaagacgacgccgacc
gccggcggcaacgactga
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