Streptomyces koyangensis: D0C37_17240
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Entry
D0C37_17240 CDS
T06436
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sky
Streptomyces koyangensis
Brite
KEGG Orthology (KO) [BR:
sky00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sky03019
]
D0C37_17240 (hrpA)
Enzymes [BR:
sky01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D0C37_17240 (hrpA)
Messenger RNA biogenesis [BR:
sky03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D0C37_17240 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
SLFN-g3_helicase
AAA_25
nSTAND3
AAA_16
T2SSE
NACHT
ResIII
NTPase_1
AAA_30
DUF6139
PhoH
MetJ
TsaE
Motif
Other DBs
NCBI-ProteinID:
AXQ56172
UniProt:
A0A385DCK6
LinkDB
All DBs
Position
complement(3934727..3938761)
Genome browser
AA seq
1344 aa
AA seq
DB search
MSTISDLQPLLAELSLRDAHRLGRRLEGTRRIRKPESRAAVLEEIRAEAEKGAARMAERR
ARVPEIRYPEQLPVSQKKDLIAEAIRDHQVVVVAGETGSGKTTQIPKICLELGRGVRGMI
GHTQPRRIAARTVAERIADELDTPLGEAVGWKVRFTDQVRQDATFIKLMTDGILLAEIQT
DRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIETDRFARHFGPR
MATVGGKEAGEDAAAPVIEVSGRTYPVEVRYRPLLEEGGEDADRDQVTAICEAVDELQAE
GPGDVLVFLSGEREIRDTADALAKRNLRGTEILPLYARLSHQEQHRVFQRPGPGVRSRVV
LATNVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSD
GICIRLYSEEDFLARPEFTDAEILRTNLASVILQMTAAGLGDIERFPFIDPPDHRNIRDG
VQLLTELGALDPAEKDPRKRLTERGRRLAQLPVDPRLARMVLEADRNGCVREVMVIAAAL
SIQDPRERPSEKQAQADQQHARFRDETSDFLGFLNLWRYLREQQKERSSSGFRRMCKAEY
LNYLRIREWQDIYTQLRTVAKQMGLELREEDAADEPVHISLLSGLLSHIGMKDVKESATT
AASAAKQGREGARGGRNEYLGARGAKFAVFPGSALFKKPPRFLMSAELVETSRLWARVNA
KIEPEWVEPLAGHLVKRTYSEPHWEKDQAAVVAYEKVTLYGVPIVAHRKVNYGRIDPEVS
RDLFIRNALVEGDWRTHHQFFAANRKLLTEVEELEHRARRRDIVVDDETLFDFYDQRVPA
EVVSGAHFDSWWKRKQKEEPELLDFERSMLLTEAAQAVTKADYPDSWRQGGLKFRVTYQF
EPGADADGVTVHIPLQVLNQVTDEGFDWQIPGLREEVVTELIRSLPKPIRRHYVPAPNYA
QAFLKRAAPLQEPLPVTLARELQRIVGVPVTGDDFDTSRVPDHLKITFRIVDERRRTLAE
DKDLEALKLKLRPKARQALSKAAAATAERSGGPSIERSGLTDWTIGALPEVFETRRAGQP
VKAYPALVDEGSSVAVRLFDSPAEQRQAMRRGIRRLILLNIPVNPAKFAADRLTNQQKLN
LSANPHGSVQALFEDCATAAADRLIADHGGPAWDEEAYRKLYEKVRADLVDTTLRAIQQV
QQVLAAWGAVERRLKSTRSPALLANLADVRAQVSALIHPGFVTEAGLGRLGDLKRYLVAA
DRRLAQMPTGVQRDTTRMAKVKEMQDEYAWLLEQLPQGRPVPKEVLEIRWMIEELRVSYF
AHALGTAYPVSDKRIVKAVDAAAP
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgatctccgaccttcagcccctgttggccgagctgtcgttgcgcgacgcgcac
cggctcggccgtcgactggagggcacccgccgtatacgcaagccggagtccagggcggcc
gtcctggaggagatcagggcggaggcggagaagggcgcggccaggatggccgagcgccgg
gcgcgggtgcccgagatccgttatcccgagcaactgccggtcagccagaagaaggacttg
atcgcggaggcgatccgggaccaccaggtggtggtcgtcgccggtgagaccgggtccggc
aagaccacccagatcccgaagatctgcctggagctggggcggggcgtgcgcggcatgatc
gggcacacccagccgcgccggatcgcggcccgtacggtggccgagcggatcgcggacgag
ctggacacgccgctcggcgaggcggtcgggtggaaggtgcgcttcaccgaccaggtccgc
caggacgccaccttcatcaagctgatgaccgacggcatcctgctcgcggagatccagacc
gaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcccacgagcggagcctc
aacatcgacttcctcctcgggtacctggcgcagttgctgccgcgccggcccgacctcaag
gtcgtcatcacctccgcgaccatcgagaccgaccggttcgcgcgccacttcgggccgcgg
atggcgacggtcggcggcaaggaggccggcgaggacgcagccgcgccggtcatcgaggtg
agcgggcggacgtacccggtggaggtgcggtaccggccgctgctggaggagggtggcgag
gacgccgaccgtgaccaggtgaccgcgatctgcgaggcggtcgacgagctccaggccgag
ggccccggcgacgtgctggtcttcctctccggcgagcgggagatccgcgacaccgccgac
gcgctggccaagcggaacctgcgcggcaccgagatcctgccgctctacgcccgcctctcc
caccaggagcagcaccgcgtcttccagcgcccgggcccgggcgtccgcagccgcgtagtg
ctggcgaccaatgtggccgagacctcgctgacggtgcccggcatcaagtacgtcatcgac
ccgggcaccgcgcgcatctcgcggtacagccaccgcaccaaggtgcagcggctgccgatc
gagccggtctcgcaggccagcgccaaccagcgcaaaggccgctgcggccgtacctcggac
ggcatctgcatccggctctactccgaggaggacttcctcgcgcggccggagttcaccgac
gcggagatcctgcggaccaacctcgcctcggtcatcctccagatgacggcggccgggctc
ggcgacatcgagcggttccccttcatcgacccgccggaccaccggaacatccgcgacggt
gtgcagctgctgaccgaactgggcgccctcgacccggccgagaaggacccgcgcaagcgg
ctcaccgagcgcgggcgccggctggcgcagctaccggtcgacccgcggctggcccggatg
gtgctggaggccgaccggaacggctgcgtccgcgaggtcatggtgatcgcggcggccctg
tcgatccaggacccgcgcgagcggccctccgagaagcaggcacaggccgatcagcagcac
gcccggttccgggacgagaccagcgacttcctcggcttcctcaacctctggcggtacctg
cgggagcagcagaaggagcggtcctcgtccgggttccgccgcatgtgcaaggcggagtac
ctcaactacctgcggatccgcgagtggcaggacatctacacgcagctgcggaccgtcgcc
aagcagatgggcctggagctgcgcgaggaggacgcggccgacgagccggtccacatctcg
ctcctctccggcctgctgtcgcacatcggcatgaaggacgtgaaggagtccgcgacgacg
gccgcctccgccgccaagcaggggcgtgagggcgcgcgcggggggcggaacgagtatctg
ggcgcccggggcgcgaagttcgcggtcttccccggttcggcgctgttcaagaagccgccg
cggttcctgatgtcggccgagctggtggagacctcccggctctgggcgcgggtcaacgcg
aagatcgaaccggaatgggtcgagccgctcgccgggcacctggtgaagcggacgtacagc
gagccgcactgggagaaggatcaggccgccgtggtcgcctacgagaaggtgacgctgtac
ggcgtgccgatcgtggcgcaccggaaggtgaactacggccggatcgacccggaggtctcc
cgggaccttttcattcgcaacgccctggtcgagggtgactggcgcacccaccaccagttc
ttcgcggccaaccggaagctgctgaccgaggtcgaggagctggagcaccgggcgcgccgc
cgcgacatcgtggtcgacgacgagacgctcttcgacttctacgaccagcgggtgccggcc
gaggtggtctccggcgcccacttcgactcctggtggaagcggaagcagaaggaggagccc
gaactcctcgatttcgagcgctccatgctgctaacggaggcggcgcaggcggtcaccaag
gccgactatccggactcctggcggcagggcgggctgaagttccgggtgacgtaccagttc
gagccgggggcggacgcggacggtgtgaccgtgcacatcccgctccaggtgctcaaccag
gtcaccgacgaggggttcgactggcagatcccggggctgcgcgaggaggtcgtcaccgag
ctgatccgctcgctgccgaagccgatccgccgccactacgtgcccgcgcccaactacgcg
caggcgttcctgaagcgcgcggccccgctccaggagccgctgccggtgacgctggcgcgg
gagttgcagcggatcgtgggcgtgccggtgaccggcgacgacttcgacacctcgcgggtc
cccgaccacctgaagatcaccttccggatcgtcgacgagcggcgacgcaccctcgccgag
gacaaggacctggaggcgctcaagctcaagctgcgccccaaggcccgccaggccctctcc
aaggcggccgcggccaccgccgagcgttccggcggcccctcgatcgagcggtcggggctg
accgactggacgatcggcgcgctgccggaggtcttcgagacccgccgggccggccagccg
gtcaaggcgtacccggccctggtcgacgagggttcctcggtcgccgtccgcctcttcgac
tcgcccgccgagcaacggcaggcgatgcggcgcggcatccggcggctgatcctgctcaac
atcccggtcaacccggccaagttcgccgccgaccggctcaccaaccagcagaagctcaac
ctctcggccaacccgcacggctccgtccaggccctcttcgaggactgcgcgacggccgcc
gccgaccgcctcatcgccgaccacggcgggcccgcctgggacgaggaggcgtaccggaag
ctgtacgagaaggtgcgcgcggacctggtggacaccacgctgcgggcgatccagcaggtc
cagcaggtgctggcggcctggggcgcggtcgagcggcggctgaagtcgacgcgttcgccg
gcgctgctggccaacctcgccgacgtccgcgctcaggtctcggcgctgatccacccgggc
ttcgtcacggaggcggggctcgggcgcctcggcgacctcaagcgctacctggtcgcggcc
gaccggcgtctggcgcagatgccgaccggggtgcagcgcgacacgacgcggatggccaag
gtcaaggagatgcaggacgagtacgcgtggctgctggagcagttgccgcagggcagaccc
gtaccgaaggaggtcctggagatccgctggatgatcgaggaactccgggtcagctacttc
gcgcacgccctcgggacggcgtacccggtctccgacaaacgcatcgtgaaggcggtggac
gcggcggccccgtga
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